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Collaborative Research: Multifidelity Uncertainty Quantification Through Model Ensembles and Repositories

Collaborative Research: Multifidelity Uncertainty Quantification Through Model Ensembles and Repositories
协作研究:通过模型集成和存储库进行多保真度不确定性量化
批准号:
2105345
负责人:
Alison Marsden
金额:
$50.87万
依托单位:
依托单位国家:
美国
项目类别:
Standard Grant
财政年份:
2021
资助国家:
美国
项目状态:
已结题
起止时间:
2021-09-01 至 2024-08-31

项目摘要

项目成果

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中文摘要
翻译
数值模拟越来越多地应用于心血管疾病的诊断和治疗规划的临床研究和实践中,产生了对可靠的模拟和分析工具的新需求。量化这些模拟中的不确定性对于增加临床采用率至关重要,但由于其过高的计算成本和复杂性,以前在很大程度上被忽视了。为了应对这些挑战,该项目利用了一类新的多保真蒙特卡罗估计器来解决正问题和逆问题,旨在通过解决大量廉价的低保真代理来降低计算复杂性。它在包括多个不确定源的全面临床问题中以合理的计算预算展示了所提出的方法。该项目的主要目标是创建一个端到端的高级网络基础设施生态系统,用于心血管模型中的不确定性量化(正问题)和参数估计(逆问题),能够通过高级蒙特卡罗估计器利用任意低保真模型,同时大幅降低计算成本和复杂性。该项目的跨学科团队正在协同计算建模、心血管生理学、UQ和开源软件,使UQ在全面的3D心血管模拟中变得容易处理,利用多保真度估计器来解决正问题和逆问题。该项目将产生无缝的网络基础设施,将两个广受好评的开源包--达科他州和SimVial--与相当大的用户社区连接起来。该项目正在为大规模的UQ任务创建新的网络基础设施生态系统。向产业界/学术界传播的信息是通过领先的心血管建模开源平台SimVculate进行的。它将利用SimVial和拟议的多保真度估计器为研究生和本科生课程创建实践教材。虽然该项目专注于心血管建模,但其结果直接适用于其他工程问题。私营部门将在国家会议上组织小型研讨会和讲习班。他们将带领外展活动到当地的K-12学校,以吸引女孩和代表不足的少数族裔学生进入STEM。PIS将通过SURF计划指导URM暑期学生,并通过斯坦福大学女性数学、科学计算和工程(WiMSCE)小组指导女性学生。该奖项反映了NSF的法定使命,并通过使用基金会的智力优势和更广泛的影响审查标准进行评估,被认为值得支持。
英文摘要
Numerical simulations are increasingly used in clinical research and practice for diagnosis and treatment planning in cardiovascular disease, creating new demand for reliable simulation and analysis tools. Quantification of uncertainty in these simulations is crucial to increased clinical adoption but has previously been largely disregarded due to its excessive computational cost and complexity. To address these challenges, the project leverages a new class of multi-fidelity Monte Carlo estimators for direct and inverse problems, designed to mitigate computational complexity through the solution of a large number of inexpensive low-fidelity surrogates. It demonstrates the proposed approach in full-scale clinical problems including multiple uncertainty sources at a reasonable computational budget. The project’s main objective is to create an end-to-end advanced cyberinfrastructure ecosystem for uncertainty quantification (direct problem) and parameter estimation (inverse problem) in cardiovascular models incorporating realistic sources of uncertainty, able to leverage arbitrary low-fidelity models through advanced Monte Carlo estimators, while drastically reducing computational cost and complexity. The project’s interdisciplinary team is synergizing computational modeling, cardiovascular physiology, UQ and open-source software towards making UQ tractable in full-scale 3D cardiovascular simulations, leveraging multi-fidelity estimators for the solution of both direct and inverse problems. The project will produce seamless cyberinfrastructure linking two well-regarded open-source packages, Dakota and SimVascular, with sizable user communities.The project is creating new cyberinfrastructure ecosystems for large-scale UQ tasks. Dissemination to industry/academia is performed through SimVascular, a leading open-source platform for cardiovascular modeling. It will leverage SimVascular and the proposed multi-fidelity estimators to create hands-on teaching material for graduate and undergraduate courses. Although the project focuses on cardiovascular modeling, its results are directly applicable to other engineering problems. The PIs will organize minisymposia and workshops at national conferences. They will lead outreach activities to local K-12 schools to attract girls and underrepresented minority (URM) students to STEM. The PIs will mentor URM summer students through the SURF program and women students through the Women in Mathematics, Scientific Computing and Engineering (WiMSCE) group at Stanford.This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.
期刊论文(6)
专著(0)
科研奖励(0)
会议论文
DOI: 10.1016/j.cma.2021.114038
发表时间: 2020-09
期刊: Computer methods in applied mechanics and engineering
影响因子: 7.2
作者: [Gabriel Maher;Casey M. Fleeter;D. Schiavazzi;A. Marsden]
通讯作者: Gabriel Maher;Casey M. Fleeter;D. Schiavazzi;A. Marsden
SimVascular Gateway for Education and Research
用于教育和研究的 SimVascular 网关
DOI: 10.1145/3491418.3535162
发表时间: 2022
期刊: Practice and Experience in Advanced Research Computing
影响因子: --
作者: [Tran, Justin, Abeysinghe, Eroma, Ladisa, John, Marsden, Alison, Pierce, Marlon]
通讯作者: Pierce, Marlon
svFSI: A Multiphysics Package for Integrated CardiacModeling
svFSI:用于集成心脏建模的多物理场软件包
DOI: 10.21105/joss.04118
发表时间: 2022
期刊: Journal of Open Source Software
影响因子: --
作者: [Zhu, Chi, Vedula, Vijay, Parker, Dave, Wilson, Nathan, Shadden, Shawn, Marsden, Alison]
通讯作者: Marsden, Alison
DOI: 10.1115/1.4056055
发表时间: 2023-03-01
期刊: JOURNAL OF BIOMECHANICAL ENGINEERING-TRANSACTIONS OF THE ASME
影响因子: 1.7
作者: [Pham,Jonathan, Wyetzner,Sofia, Marsden,Alison L. L.]
通讯作者: Marsden,Alison L. L.
Collaborative Research: Frameworks: A multi-fidelity computational framework for vascular mechanobiology in SimVascular
  • 批准号:
    2310909
  • 项目类别:
    Standard Grant
  • 资助金额:
    $159.98万
  • 财政年份:
    2023
  • 负责人:
    Alison Marsden
  • 依托单位:
SI2-SSI Collaborative Research: The SimCardio Open Source Multi-Physics Cardiac Modeling Package
  • 批准号:
    1663671
  • 项目类别:
    Standard Grant
  • 资助金额:
    $143.12万
  • 财政年份:
    2017
  • 负责人:
    Alison Marsden
  • 依托单位:
Collaborative Research: SI2-SSI: A Sustainable Open Source Software Pipeline for Patient Specific Blood Flow Simulation and Analysis
  • 批准号:
    1562450
  • 项目类别:
    Standard Grant
  • 资助金额:
    $81.28万
  • 财政年份:
    2015
  • 负责人:
    Alison Marsden
  • 依托单位:
CDS&E: Uncertainty Quantification and Bayesian Updating in Data-Driven Cardiovascular Modeling
  • 批准号:
    1508794
  • 项目类别:
    Standard Grant
  • 资助金额:
    $37.5万
  • 财政年份:
    2015
  • 负责人:
    Alison Marsden
  • 依托单位:
国内基金
海外基金
Research on Quantum Field Theory without a Lagrangian Description
  • 批准号:
    24ZR1403900
  • 项目类别:
    省市级项目
  • 资助金额:
    --
  • 批准年份:
    2024
  • 负责人:
    SATOSHI NAWATA
  • 依托单位:
Cell Research
Cell Research
Cell Research (细胞研究)