Reference genomes of the Chinese perch (Siniperca chuatsi), the Eurasian perch (Perca fluviatilis) and three related fish species of the family Sinipercidae for comparative genomics and marker assisted breeding in aquaculture

中国鲈鱼（Siniperca chuatsi）、欧亚鲈鱼（Perca Fluviatilis）和鳜科三种相关鱼类的参考基因组，用于水产养殖中的比较基因组学和标记辅助育种

• 批准号: 324050651
• 负责人: Dr.-Ing. Heiner Kuhl
• 金额: --
• 依托单位: Abteilung 5: Evolutionäre und Integrative Ökologie
• 依托单位国家: 德国
• 项目类别: Research Grants
• 财政年份: 2017
• 资助国家: 德国
• 起止时间: 2016-12-31 至 2020-12-31
• 项目状态: 已结题
• 来源: https://gepris.dfg.de/gepris/projekt/324050651?language=en
• 关键词: Reference; genomes; Chinese; perch; Siniperca

Siniperca chuatsi, also known as Mandarin fish or Chinese perch is a highly valuable aquaculture fish, whose production has been constantly growing over the past twenty years in China. The aim of this project is to provide high quality reference genomes of Siniperca chuatsi and three other members of the Sinipercidae family (S. kneri, S. scherzeri and C. whiteheadi). This international project will be complemented by a reference assembly of Perca fluviatilis as a related species of future interest in European aquaculture. These data will be used to perform comparative genomic analysis within Sinipercids/Percids as well as with more distantly related Percomorphaceae species. For this purpose, bioinformatic strategies need to be developed that allow multi-species comparisons which combine chromosomal collinearity, gene- and nucleotide-level genomic analyses. These bioinformatics tools will help to answer biological questions regarding growth, salinity tolerance and sexual differentiation.

鳜鱼，又名鳜鱼、鲈鱼，是一种高价值的养殖鱼类，近二十年来我国产量不断增长。该项目的目的是提供鳜和鳜科其他三个成员（S. kneri、S. scherzeri 和 C. Whiteheadi）的高质量参考基因组。该国际项目将得到河鲈参考组装的补充，作为欧洲水产养殖未来感兴趣的相关物种。这些数据将用于对鳜鱼/鲈鱼以及关系较远的鲈鱼科物种进行比较基因组分析。为此，需要开发生物信息学策略，允许结合染色体共线性、基因和核苷酸水平基因组分析的多物种比较。这些生物信息学工具将有助于回答有关生长、耐盐性和性别分化的生物学问题。

项目成果

CSA: A high-throughput chromosome-scale assembly pipeline for vertebrate genomes

• DOI: 10.1093/gigascience/giaa034
• 发表时间: 2020-05
• 期刊: GigaScience
• 影响因子: 9.2
• 作者: Heiner Kuhl;Ling Li;S. Wuertz;M. Stöck;Xu-Fang Liang;C. Klopp

Mandarin fish (Sinipercidae) genomes provide insights into innate predatory feeding

鳜鱼（鳜科）基因组提供了对先天掠食性进食的见解

• DOI: 10.1038/s42003-020-1094-y
• 发表时间: 2020-07-09
• 期刊: COMMUNICATIONS BIOLOGY
• 影响因子: 5.9
• 作者: He, Shan;Li, Ling;Liang, Xu-Fang
• 通讯作者: Liang, Xu-Fang