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The analysis of copy number variations in the field populations for disease ecology

The analysis of copy number variations in the field populations for disease ecology
疾病生态学领域野外种群拷贝数变异分析
批准号：
24657011
负责人：
KAWATA Masakado
金额：
$2.66万
依托单位：
Tohoku University
依托单位国家：
日本
项目类别：
Grant-in-Aid for Challenging Exploratory Research
财政年份：
2012
资助国家：
日本
项目状态：
已结题
起止时间：
2012-04-01 至 2014-03-31
来源：
https://kaken.nii.ac.jp/en/grant/KAKENHI-PROJECT-24657011/
关键词：
分子生態疾病生態学保全生態学抗菌ペプチド遺伝子コピー数変異遺伝子コピー数ヤマアカガエル

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中文摘要
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英文摘要
Our previous study indicated that anti peptide, Temporin-1 in Rana ornativentirs shows copy-number variations. In order to determine DNA sequences in the regions including temporin-1, we created fosmid library and chose the clone libraries including temporin-1. Then we tried to determine these DNA sequences using the next generation sequencer (Ion PGM). The results showed that among about 40kbp DNA region, those in 33kbp were non-coding regions. The rest of the sequences contained at least three copies of temporin-1, including temporin-1Oj and temproin-1OC. This suggests that these copies of temporin might be tenderly repeated. At the present study, we could not determine complete sequences of these regions.
期刊论文(4)
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会议论文
Genome-wide deserts for copy number variation in vertebrates
DOI： 10.1038/ncomms3283
发表时间： 2013-08-01
期刊： NATURE COMMUNICATIONS
影响因子： 16.6
作者： [Makino, Takashi, McLysaght, Aoife, Kawata, Masakado]
通讯作者： Kawata, Masakado
Evolutionary factors affecting species range shift: using butterfly species
  • 批准号：
    24370005
  • 项目类别：
    Grant-in-Aid for Scientific Research (B)
  • 资助金额：
    $11.81万
  • 财政年份：
    2012
  • 负责人：
    KAWATA Masakado
  • 依托单位：
    Tohoku University
Detecting evolutionary responses of invasion species through determining the whole genome sequences.
  • 批准号：
    22657004
  • 项目类别：
    Grant-in-Aid for Challenging Exploratory Research
  • 资助金额：
    $2.19万
  • 财政年份：
    2010
  • 负责人：
    KAWATA Masakado
  • 依托单位：
    Tohoku University
Determining adaptive traits and the candidate genes in Cuban Anolis lizards
  • 批准号：
    22405008
  • 项目类别：
    Grant-in-Aid for Scientific Research (B)
  • 资助金额：
    $12.31万
  • 财政年份：
    2010
  • 负责人：
    KAWATA Masakado
  • 依托单位：
    Tohoku University
Mechanisms for maintenance of color vision polymorphism : with relation of male body colors and female choice
  • 批准号：
    21370007
  • 项目类别：
    Grant-in-Aid for Scientific Research (B)
  • 资助金额：
    $12.15万
  • 财政年份：
    2009
  • 负责人：
    KAWATA Masakado
  • 依托单位：
    Tohoku University
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