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Single-cell and spatial mapping of human diabetic cardiomyopathy

人类糖尿病心肌病的单细胞和空间图谱

基本信息

批准号：
497580606
负责人：
Professor Dr. Rafael Kramann
金额：
--
依托单位：
Klinik für Thorax- und Kardiovaskularchirurgie
依托单位国家：
德国
项目类别：
Research Grants
财政年份：
资助国家：
德国
起止时间：
项目状态：
未结题

来源：
https://gepris.dfg.de/gepris/projekt/497580606?language=en
关键词：
Single cell spatial mapping human

项目摘要

In patients with diabetes mellitus, the presence of myocardial dysfunction in the absence of coronary artery disease, valvular disease or conventional cardiovascular risk factors, such as hypertension and dyslipidemia, has led to the term diabetic cardiomyopathy. Diabetic cardiomyopathy is characterized by myocardial fibrosis, dysfunctional remodeling, and associated diastolic and later systolic- dysfunction. The underlying mechanisms are unclear and specific therapies do not exist. We have access to a unique biobank with samples of ventricular myocardium of 140 transplanted diabetic cardiomyopathy patients and will utilize 20 rejected donor hearts, 20 ischemic cardiomyopathy and 20 monogenetic cardiomyopathy specimens as references. The ventricular tissue is available from orthotopic heart-transplantations (HTx) and/or ventricular assist device implantations. We will utilize high resolution spatial transcriptomics (DBIT-seq, 5µm) combined with snRNA and snATAC seq to map human diabetic cardiomyopathy at unprecedented resolution. We will multiplex specimen and demultiplex using genetic variability (SNPs) to increase throughput and decrease costs. We will apply state-of-the-art as well as novel bespoke computational methodologies with the ultimative goal to identify mechanisms and therapeutic targets.

在糖尿病患者中，在没有冠状动脉疾病、瓣膜疾病或常规心血管危险因素（如高血压和血脂异常）的情况下，心肌功能障碍的存在导致了术语“糖尿病性心肌病”。糖尿病性心肌病的特征是心肌纤维化、重构功能不全以及相关的舒张和后期收缩功能不全。潜在的机制尚不清楚，也不存在特定的治疗方法。我们有一个独特的生物库，其中有140例移植的糖尿病心肌病患者的心室心肌样本，并将使用20例排斥供体心脏，20例缺血性心肌病和20例单基因心肌病标本作为参考。心室组织可通过原位心脏移植（HTx）和/或心室辅助装置植入获得。我们将利用高分辨率空间转录组学（DBIT-seq, 5µm）结合snRNA和snATAC seq以前所未有的分辨率绘制人类糖尿病心肌病。我们将利用遗传变异（SNPs）对标本进行多重复制和去多重复制，以提高产量并降低成本。我们将应用最先进的以及新颖的定制计算方法，最终目标是确定机制和治疗靶点。