Construction of First-Principle Methodology for Predicting Shape and Size Distribution of Micelles
Construction of First-Principle Methodology for Predicting Shape and Size Distribution of Micelles
批准号:
12640495
负责人:
KINOSHITA Masahiro
金额:
$2.69万
依托单位:
依托单位国家:
日本
项目类别:
Grant-in-Aid for Scientific Research (C)
财政年份:
2000
资助国家:
日本
项目状态:
已结题
起止时间:
2000 至 2002
中文摘要
对生物体系的研究,如预测蛋白质的三级结构,在方法学和溶剂效应上类似于胶束研究,我们构建了一种杂交型模拟方法。它结合了RISM理论(分子流体的统计力学理论),用于考虑溶剂效应的RISM理论,用于表面活性剂分子构象采样的蒙特卡罗模拟退火法,以及传统的热力学方法。用几种简化的表面活性剂模型计算了临界胶束浓度、胶束形状和粒径分布。它正被扩展到更现实的模型,以解释为什么在非离子表面活性剂的情况下,平均胶束尺寸随着温度的升高而变大。RISM理论的有效桥式修正。将改进的RISM方法与Kirkwood-Buff理论相结合,计算了扩展构象和α-螺旋构象中的20个氨基酸和谷氨酸寡肽的偏摩尔体积。电桥修正大大提高了计算值与实验值之间的一致性。由于计算负担较大,三维版本的积分方程组理论不适用于混合型模拟方法。然而,它对于详细分析大而复杂的溶质分子的微观溶剂化结构是非常有用的。作为一个例子,我们研究了熵排除体积效应在胶体和生物体系中的作用。特别是,研究表明,仅通过熵排除体积效应,大分子之间的锁键空间相互作用就会产生非常高的选择性。
英文摘要
Research for biological systems such as the prediction of tertiary structures of proteins, which is similar to the micelle research in the methodology and solvent effects, has also been performed.We have constructed a hybrid-type simulation method. It is a combination of the RISM theory (a statistical-mechanical theory for molecular fluids) for incorporating the solvent effects, the Monte Carlo simulated annealing for conformational sampling for a set of surfactant molecules, and a conventional thermodynamic method. It has been demonstrated for several simplified model surfactants to calculate the critical micelle concentration, micelle shape, and size distribution. It is being extended to more realistic models to elucidate why the average micelle size becomes larger as the temperature increases in cases of nonionic surfactants.We propose a simple. efficient bridge correction of the RISM theory. By combining the modified RISM method with the Kirkwood-Buff theory, the partial molar volume is calculated for the 20 amino acids and for oligopeptides of glutamic acids in extended and α-helix conformations. The bridge correction drastically improves agreement between the calculated values and the experimental data.The three-dimensional version of the integral equation theory is not applicable to the hybrid-type simulation method due to the heavy computational burden. However, it is very useful in detailed analyses of the microscopic solvation structure of a large, complicated solute molecule. As an example, we have examined the roles of the entropic excluded-volume effects in colloidal and biological systems. In particular, it has been shown that remarkably high selectivity arises in the lock and key steric interaction between macromolecules by the entropic excluded-volume effects alone.
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Ayori Mitsutake, Masahiro Kinoshita, Yuko Okamoto, Fumio Hirata: "Multicanonical Algorithm Combined with the RISM Theory for Simulating Peptides in Aqueous Solution"Chemical Physics Letters. 329(3,4). 295-303 (2000)
Ayori Mitsutake、Masahiro Kinoshita、Yuko Okamoto、Fumio Hirata:“结合 RISM 理论的多规范算法模拟水溶液中的肽”化学物理快报。
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通讯作者:
木下正弘, 岡本祐幸, 平田文男: "タンパク質立体構造形成における溶媒効果"生物物理. 40(6). 374-378 (2000)
Masahiro Kinoshita、Yuyuki Okamoto、Fumio Hirata:“溶剂对蛋白质 3D 结构形成的影响”生物物理学 40(6) 374-378 (2000)。
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Masahiro KINOSHITA, Yoshiki SUGAI: "Methodology for Prediction Approximate Shape and Size Distribution of Micelles"Studies in Surface Science and Catalysis. 132. 109-112 (2001)
Masahiro KINOSHITA、Yoshiki SUGAI:“预测胶束近似形状和尺寸分布的方法”表面科学和催化研究。
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Takashi IMAI, Hiroyasu NOMURA, Masahiro KINOSHITA, Fumio HIRATA: "Partial Molar Volume and Compressibility of Alkali Halide Ions in Aqueous Solution: Hydration Shell Analysis with an Integral Equation Theory of Molecular Liquids"The Journal of Physics Che
Takashi IMAI、Hiroyasu NOMURA、Masahiro KINOSHITA、Fumio HIRATA:“水溶液中碱金属卤化物离子的偏摩尔体积和可压缩性:用分子液体积分方程理论进行水合壳层分析”物理化学杂志
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Masahiro KINOSHITA: "Interaction between Surfaces with Solvophobicity or Solvophilicity Immersed in Solvent: Effects Due to Addition of Solvophobic of Solvophilic Solute"The Journal of Chemical Physics, in press..
Masahiro KINOSHITA:“浸入溶剂中的具有疏溶剂性或亲溶剂性的表面之间的相互作用:由于添加亲溶剂性溶质的疏溶剂性而产生的影响”化学物理杂志,正在出版。
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共 52 条
Construction of protein-structure prediction method based on liquid state theory
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批准号:22300100
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项目类别:Grant-in-Aid for Scientific Research (B)
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资助金额:$11.07万
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财政年份:2010
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负责人:KINOSHITA Masahiro
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依托单位:
Long-Range Interaction between Macroparticles in Binary Fluid Mixture
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批准号:10640489
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项目类别:Grant-in-Aid for Scientific Research (C)
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资助金额:$1.98万
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财政年份:1998
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负责人:KINOSHITA Masahiro
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依托单位: