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Material collection for comprehensive phylogeny of the family Dipterocarpaceae

龙脑香科综合系统发育资料收集

基本信息

批准号：
17405032
负责人：
ALFRED E
金额：
$ 9.17万
依托单位：
Kyushu University
依托单位国家：
日本
项目类别：
Grant-in-Aid for Scientific Research (B)
财政年份：
2005
资助国家：
日本
起止时间：
2005 至 2007
项目状态：
已结题

来源：
https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-17405032/
关键词：
population genetics evolution internet database population genetics evolution internet database 集団遺伝学

项目摘要

1. One month long trip was made to India and Sri Lanka. During the trip samples were collected from 15 species from Dipterocarpaceae family occurring in the Indian Western Ghats and Sri Lanka. Together with samples collected previously, we now possess samples representing all genera of this family occurring in Asia. In addition, samples were collected in populations of the following mangrove species: Bruguiera gymnorrhiza, B. sexangula and Rhizophora apiculata.2. First comprehensive molecular phylogeny of the sub-family Dipterocarpoideae based on chloroplast DNA sequences was published (Gamage, et. al. 2006).3. One MSc thesis was completed (Aoi Saitoh).4. Material from populations of four species from the genus Shorea occurring in Indonesia.5. Samples obtained from Indonesia have been used for a study of geographic history of Shorea parvifolia . It is based on analysis of DNA polymorphism in two nuclear gene loci.6. MySQL powered database containing list of all samples stored in our la … More boratory(including those procured in the present project) is available for public access on the following website: http://genetics.biology.kyushu-u.ac.jp.7. Ten days trip was made to Thailand. During this trip we collected samples from more than 30 additional species of Dipterocarpaceae from different parts of the country. In addition, we also collected samples from two mangrove species: Rhizophora apiculata and R. mucronata. Furthermore, samples of additional species of Dipterocarpaceae were also collected in southern China.8. Seven papers have been published in the following international journals: Heredity, Molecular Biology and Evolution, Genes and Genetic Systems, Canadian Journal of Forest Research and Tree Genetics and Genomes.9. One BSc (Iwaya Chihiro) and three PhD theses (Ishiyama Hiroko, Ismael Khatab, Araki T. Neyton)were defended at the Department of Biology, Kyushu University.10. Seven presentations were made at international conferences in Japan, Spain, Germany and United Kingdom.11. The operating system of our web server hosting the sample database has been replaced with the latest version of SuSE Linux 10.3. An upgrade has also been to MySQL server, which powers our database and to the Apache web service. Disk space has been extended by 500 GB.12. A new literature database containing more than 160000 references has been built and is currently being prepared for public deployment on our server Less

1.为期一个月的印度和斯里兰卡之旅。在这次旅行中，从印度西高止山脉和斯里兰卡的龙脑香科15个物种中收集了样品。加上以前收集的样品，我们现在拥有代表在亚洲发生的所有属的样品。此外，在以下红树林物种的种群中采集样品：木榄，B。sexangula和Rhizophora apiculata。发表了基于叶绿体DNA序列的龙脑香亚科的第一个全面的分子遗传学（Gamage，et. 3.完成硕士论文1篇（斋藤葵）。来自印度尼西亚Shorea属四个物种种群的材料。5.从印度尼西亚获得的样品已被用于Shorea parvifolia的地理历史的研究。这是基于两个核基因位点的DNA多态性分析. MySQL供电的数据库，包含存储在我们的la中的所有样本列表 ...更多信息公众可在以下网站上查阅实验室（包括本项目采购的实验室）：http：//genetics. biology. kyushu-u. ac. jp. 7。10天的泰国之旅。在这次旅行中，我们收集了来自全国不同地区的30多个其他种类的龙脑香科的样本。此外，我们还采集了两种红树林：Rhizophora apiculata和R. mucronata。此外，在中国南部还采集了更多龙脑香科物种的样品。在下列国际期刊上发表了7篇论文：《遗传学》、《分子生物学和进化》、《基因和遗传系统》、《加拿大森林研究杂志》和《树木遗传学和基因组》。一个理学士（岩谷千寻）和三个博士论文（石山广子，伊斯梅尔Khatab，荒木T。Neyton）在九州大学生物系进行了辩护。在日本、西班牙、德国和联合王国举行的国际会议上作了七次专题介绍。托管示例数据库的Web服务器的操作系统已替换为最新版本的SuSE Linux 10.3。MySQL服务器也进行了升级，它为我们的数据库和Apache Web服务提供了动力。磁盘空间已扩展500 GB。12.一个新的文献数据库，包含超过160000参考已经建成，目前正在准备公开部署在我们的服务器上