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Discrimination of Species with Disorder of DNA Sequences and its Application to Evolution in Introns

Discrimination of Species with Disorder of DNA Sequences and its Application to Evolution in Introns
DNA序列紊乱物种的识别及其在内含子进化中的应用
批准号:
17500146
负责人:
YOSHIHARA Ikuo
金额:
$2.43万
依托单位:
依托单位国家:
日本
项目类别:
Grant-in-Aid for Scientific Research (C)
财政年份:
2005
资助国家:
日本
项目状态:
已结题
起止时间:
2005 至 2007

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中文摘要
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英文摘要
It is believed that evolutionary imprints have been accumulated in DNA sequence of chromosome and most of the DNA analyzing methods are based on pattern matching technology. However, it is doubtful to find almost all the significant schemes are known well in advance and also it is difficult to analyze precisely in case of getting only few fossil or sample.In such cases, a method to compare species in brief is probably welcome, even if accuracy is not enough high. Then we think out a novel method that employs disorder or irregularity of the DNA sequences to compare species. Species are compared each other from the viewpoint of irregularity of DNA sequences instead of conventional methods. The merit of the method is no need of the preliminary knowledge of the species or genes, because this method doesn't require characteristics or analyzed information of the sequence, beforehand.On the other hand, even if irregular indices are the same, it does not directly mean the species are the same. It is desirable to check the sequences from the view point some indices of irregularity. I tried to apply various methods, e.g. statistics, physical, statistical amounts like the long distance order degree etc. of several statistics, the 1/f fluctuation, the information entropy, and the quantum statistics mechanics like the occurrence rate etc. Many experiments lead us to the conclusion that the proposed method distinguishes if the living creature is comparatively near or far, but it is hard to obtain the taxonomical trees only with the indices of irregularity.
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An Automatic Model Building for Time Series using Genetic Programming
使用遗传编程的时间序列自动模型构建
DOI: --
发表时间: 2007
期刊: Proc. Kantaoui Forum 1(CD-ROM)
影响因子: --
作者: [Yoshihara I, Yasunaga M, Yamamori K.]
通讯作者: Yamamori K.
ゲノム解析に用いるDPマッチングの分割統治法による高速化
使用分治法加速基因组分析中的 DP 匹配
DOI: --
发表时间: 2006
期刊: 宮崎大学工学部紀要 35
影响因子: --
作者: [中川匠, 吉原郁夫, 由森一人, 安永守利]
通讯作者: 安永守利
SOM-based Classification of Species using Sequences of Ribosomal Protein Genes
使用核糖体蛋白基因序列进行基于 SOM 的物种分类
DOI: --
发表时间: 2006
期刊: Memoirs of Faculty of Engineering, Univ.of Miyazaki No.35
影响因子: --
作者: [Y.Higashi, M.Yoshiharma, I.Yoshihara, K.Yamamori, N.Kenmochi]
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Self-Organizing Map of Species using Ribosomal Protein DNA Sequences
使用核糖体蛋白 DNA 序列的自组织物种图谱
DOI: --
发表时间: 2006
期刊: Proc.Artificial Life and Robotics(AROB11th) 11th'06(CD-ROM)
影响因子: --
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