Roles of hyper-anisotropic dynamics and frustration on protein function investigated in sub-msec order
Roles of hyper-anisotropic dynamics and frustration on protein function investigated in sub-msec order
批准号:
19370062
负责人:
KITAO Akio
金额:
$11.65万
依托单位:
依托单位国家:
日本
项目类别:
Grant-in-Aid for Scientific Research (B)
财政年份:
2007
资助国家:
日本
项目状态:
已结题
起止时间:
2007 至 2010
中文摘要
为了在大的时间和空间范围内阐明蛋白质的详细功能原理,我们着眼于纳米到亚毫秒级的动力学,通过分子模拟观察功能相关的蛋白质动力学,并研究了系统的超各向异性和受挫性。我们还开发了从大量并行模拟中计算自由能景观和提取高维动力学中相关运动的方法,并利用它们来研究蛋白质动力学与功能之间的关系。
英文摘要
To elucidate the detailed protein functional principle in broad time and space ranges, we focused on the dynamics of nano to sub-milli sec order, observed function relevant protein dynamics by molecular simulation, and studied the hyper anisotropy and frustration of the systems. We also have developed the methods to calculate free energy landscape from massive parallel simulations and to extract correlated motions in high dimensional dynamics and used them to investigate the relation between protein dynamics and function.
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Enhanced resolution of molecular recognition to distinguish structurally similar molecules by different conformational responses of a protein uponligand binding
增强分子识别的分辨率,通过配体结合时蛋白质的不同构象响应来区分结构相似的分子
DOI:
--
发表时间:
2011
期刊:
Journal of Structural Biology
影响因子:
3
作者:
[Shinmoto, H., et al., Takahashi A., 李秀〓, Mariko Higuchi]
通讯作者:
Mariko Higuchi
DOI:
10.1016/j.bpj.2009.08.019
发表时间:
2009-11-04
期刊:
BIOPHYSICAL JOURNAL
影响因子:
3.4
作者:
[Loeffler, Hannes H., Kitao, Akio]
通讯作者:
Kitao, Akio
Molecular simulation study to examine the possibility of detecting protein conformational motions by coherent neutron scattering
分子模拟研究探讨通过相干中子散射检测蛋白质构象运动的可能性
DOI:
--
发表时间:
2008
期刊:
影响因子:
--
作者:
[Y. Joti, A. Kitao]
通讯作者:
A. Kitao
細菌べん毛モーター固定子複合体MotA/MotBの分子モデリング
细菌鞭毛运动定子复合物 MotA/MotB 的分子建模
DOI:
--
发表时间:
2010
期刊:
影响因子:
--
作者:
[Hitomi Takahashi, et al., 北尾彰朗, 西原泰孝]
通讯作者:
西原泰孝
生体超分子の立体構造変化と機能
生物超分子的构象变化与功能
DOI:
--
发表时间:
2010
期刊:
影响因子:
--
作者:
[Hitomi Takahashi, et al., 北尾彰朗, 西原泰孝, 北尾彰朗]
通讯作者:
北尾彰朗
共 125 条
Structure modeling and functional analysis of rotary motor state proteins based on mutational information
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批准号:23370066
-
项目类别:Grant-in-Aid for Scientific Research (B)
-
资助金额:$12.81万
-
财政年份:2011
-
负责人:KITAO Akio
-
依托单位:
Development of simulation methods for biological supramolecular structure and function analyses
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批准号:16087202
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项目类别:Grant-in-Aid for Scientific Research on Priority Areas
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资助金额:$51.9万
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财政年份:2004
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负责人:KITAO Akio
-
依托单位:
Underlying mechanism of bio-nano-machine investigated by massive molecular dynamics method
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批准号:15300103
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项目类别:Grant-in-Aid for Scientific Research (B)
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资助金额:$10.18万
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财政年份:2003
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负责人:KITAO Akio
-
依托单位:
Mechanism of the CD2/CD58 complex formation in immune system
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批准号:11680657
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项目类别:Grant-in-Aid for Scientific Research (C)
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资助金额:$2.3万
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财政年份:1999
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负责人:KITAO Akio
-
依托单位:
Dynamics of the Electron Transfer Reaction in Cytochrome b_5
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批准号:06680650
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项目类别:Grant-in-Aid for General Scientific Research (C)
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资助金额:$1.41万
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财政年份:1994
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负责人:KITAO Akio
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依托单位:
海外基金