Molecular simulation study of membrane morphology change induced by proteins
Molecular simulation study of membrane morphology change induced by proteins
批准号:
19370069
负责人:
TAKADA Shoji
金额:
$11.65万
依托单位:
依托单位国家:
日本
项目类别:
Grant-in-Aid for Scientific Research (B)
财政年份:
2007
资助国家:
日本
项目状态:
已结题
起止时间:
2007 至 2009
中文摘要
膜形态的改变,如细胞融合和细胞分裂,是由相关蛋白诱导的。本文的研究目的是建立蛋白质-膜复合物的粗粒度模拟模型,并将其应用于膜形态动力学。我们扩展了蛋白质的多盆模型,使用Noguchi模型研究脂类,并提出了排除体积和疏水相互作用的蛋白-脂相互作用项。通过这个新模型,我们成功地模拟了囊泡的形成、囊泡融合、双组分囊泡的相分离以及出芽的机制。
英文摘要
Membrane morphology change, such as cell fusion and cell division, is induced by related proteins. The aim of the research here is to develop a coarse-grained simulation model for protein-membrane complex and to apply it to the membrane morphology dynamics. We extended the multiple-basin model for proteins, used Noguchi model for lipids, and proposed the excluded volume and hydrophobic interaction terms for the protein-lipid interaction. By this new model, we successfully simulated vesicle formation, vesicle fusion, phase separation of 2-components vesicle, and budding addressing their mechanisms.
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MECHANISM OF UNIDIRECTIONAL MOVE OF KIF1A MOTOR STUDIED BY COARSE-GRAINED SIMULATIONS
粗粒度仿真研究KIF1A电机单向运动机理
DOI:
--
发表时间:
2010
期刊:
影响因子:
--
作者:
[Ryo Kanada, Takeshi Kuwata, Hiroo Kenzaki, Shoji Takada]
通讯作者:
Shoji Takada
Membrane morphology dynamics induced by proteins: Coarse-grained molecular simulationsタンパク質によって誘起される膜形態ダイナミクス:粗視化分子シミュレーション
蛋白质诱导的膜形态动力学:粗粒度分子模拟
DOI:
--
发表时间:
2009
期刊:
影响因子:
--
作者:
[藤原慎司, 高田彰二]
通讯作者:
高田彰二
Folding simulations of chignolin by self-learning multiscale method
自学习多尺度方法模拟木犀草素的折叠
DOI:
--
发表时间:
2009
期刊:
影响因子:
--
作者:
[Wenfei Li, Shoji Takada]
通讯作者:
Shoji Takada
DOI:
--
发表时间:
2007
期刊:
影响因子:
--
作者:
[Shoji Takada]
通讯作者:
Shoji Takada
DOI:
--
发表时间:
2009
期刊:
影响因子:
--
作者:
[Wenfei Li, Shoji Takada]
通讯作者:
Shoji Takada
共 45 条
Theoretical study on transition path search algorithms in complex biomolecular systems
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批准号:16KT0054
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项目类别:Grant-in-Aid for Scientific Research (B)
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资助金额:$11.9万
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财政年份:2016
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负责人:TAKADA Shoji
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依托单位:
Simulation study of biomolecular motors: Structural analysis of regulation mechanisms of chemical reaction by motor movements
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批准号:22370057
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项目类别:Grant-in-Aid for Scientific Research (B)
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资助金额:$12.15万
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财政年份:2010
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负责人:TAKADA Shoji
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依托单位: