Epigenomic variation and its relationship with genetic and phenotypic variations in the mouse

小鼠表观基因组变异及其与遗传和表型变异的关系

• 批准号: 21200037
• 负责人: ICHIYANAGI Kenji
• 金额: $ 19.8万
• 依托单位: Kyushu University (2010-2011)National Institute of Genetics (2009)
• 依托单位国家: 日本
• 项目类别: Grant-in-Aid for Scientific Research on Innovative Areas (Research a proposed research project)
• 财政年份: 2009
• 资助国家: 日本
• 起止时间: 2009 至 2011
• 项目状态: 已结题
• 来源: https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-21200037/
• 关键词: ゲノム多様性; ゲノム機能・発現; エピゲノム多様性; エピゲノム; DNAメチル化; 表現型分離; 種分化; レトロトランスポゾン

Phenotypic variations within ａ population of ａ species can lead to speciation. Besides genetic variations, variations of epigenetic regulation, such as DNA methylation and histon post-translational modifications, among the individuals could be a source of such phenotypic variation. In this study, we first established ａ method to collect methylated genomic DNA regions, then utilized ａ next generation sequencer to compare DNA methylation between mouse strains of the identical species but different subspecies, which identified about 1500 and 4000 regions showing difference in DNA methylation levels between the strains in liver and sperm, respectively. Interestingly, about half of the regions identified in liver showed methylation difference in sperm as well. Together with a F1 hybrid analysis, the results suggest that majority of intraspecific epigenetic variations are due to cis-sequences of these regions.

一个物种种群内的表型变异可以导致物种形成。除了遗传变异外，个体间表观遗传调控的变异，如DNA甲基化和希斯顿翻译后修饰，可能是这种表型变异的来源。在本研究中，我们首先建立了一种方法来收集甲基化的基因组DNA区域，然后利用下一代测序仪比较DNA甲基化在同一物种但不同亚种的小鼠品系之间，确定了约1500和4000区域的DNA甲基化水平的差异株之间的肝脏和精子。有趣的是，在肝脏中发现的大约一半区域在精子中也显示出甲基化差异。结合F1杂交分析，结果表明，大多数种内表观遗传变异是由于这些区域的顺式序列。

项目成果

マウス亜種間における体細胞および生殖細胞でのDNAメチル化の違い

小鼠亚种之间体细胞和种系 DNA 甲基化的差异

• 发表时间: 2011
• 作者: 一柳朋子;藤英博;大川恭行;佐々木裕之;一柳健司
• 通讯作者: 一柳健司