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Development of quantitative multiplex DNA amplification method by loop-mediated isothermal amplification (LAMP) using Qprobe.

Development of quantitative multiplex DNA amplification method by loop-mediated isothermal amplification (LAMP) using Qprobe.
使用 Qpr​​obe 通过环介导等温扩增 (LAMP) 开发定量多重 DNA 扩增方法。
批准号:
22590539
负责人:
IHIRA Masaru
金额:
$2.91万
依托单位:
依托单位国家:
日本
项目类别:
Grant-in-Aid for Scientific Research (C)
财政年份:
2010
资助国家:
日本
项目状态:
已结题
起止时间:
2010 至 2012

项目摘要

项目成果

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中文摘要
翻译
环介导等温扩增方法(LAMP)以高特异性、效率和速度扩增DNA。然而,与实时PCR相比,LAMP不足以定量靶DNA。本研究建立了一种以Q探针为探针的HSV-1和HSV-2的LAMP定量检测方法。在单重反应中,定量的LAMPs在15 min内扩增HSV DNA。HSV-1和HSV-2的LAMP定量检测灵敏度高,重复性好。然而,不可能确定多重扩增的最佳条件。此外,我们还建立了一种新的分子生物学方法--Q探针法,用于筛选HHV-6 B的抗GCV株。新的分子生物学方法的结果与直接测序的结果一致。序列特异性DNA-RNA嵌合探针(循环探针)也是检测SNP的合适方法。LAMP和循环探针的结合可能是一种很好的定量分析工具。作为第一步,我们建立了联合收割机实时荧光定量PCR与循环探针相结合的VZV野毒株和Oka疫苗株的定量检测方法。
英文摘要
The loop-mediate isothermal amplification method (LAMP) amplifies DNA with high specificity efficiency, and speed. However, the LAMP is insufficient for quantification of target DNA in comparison to the real-time PCR. In this study, we developed quantitative LAMP assay for HSV-1 and HSV-2 by Qprobe, which is quenched via electron transfer between the dye and guanine base at particular position. In singleplex reaction, the quantitative LAMPs amplified HSV DNA within 15min. The quantitative LAMP for HSV-1 and HSV-2 had high sensitivity and reproducible. However, it was impossible to determine an optimal condition for multiplex amplification. In addition, a new molecular method by using Qprobe was evaluated for screening of GCV resistant HHV-6B. The results of the new molecular method were consistent with those of the direct sequence. The sequence-specific DNA-RNA chimeric probe (cycling probe) is also appropriate method for the detection of SNP. The combination of LAMP and cycling probe might be good tool for quantitative analysis. As the first step, we developed quantitative assay combine real-time PCR with cycling probe to discriminate wild type and Oka-vaccine strain of VZV.
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会议论文
Host factors associated with the kinetics of EBV DNA load in patients with primary EBV infection.
与原发性 EBV 感染患者 EBV DNA 载量动力学相关的宿主因素。
DOI: --
发表时间: 2011
期刊: Microbiol Immunol.
影响因子: --
作者: [Nakai H, Kawamura Y, Sugata K, Sugiyama H, Enomoto Y, Asano Y, Ihira M, Ohashi M, Kato T, Yoshikawa T.]
通讯作者: Yoshikawa T.
DOI: --
发表时间: 2011
期刊:
影响因子: --
作者: [M.Ihira]
通讯作者: M.Ihira
DOI: 10.1016/j.jcv.2011.02.002
发表时间: 2011-05-01
期刊: JOURNAL OF CLINICAL VIROLOGY
影响因子: 8.8
作者: [Kawamura, Yoshiki, Sugata, Ken, Yoshikawa, Tetsushi]
通讯作者: Yoshikawa, Tetsushi
DOI: 10.1111/j.1348-0421.2012.00489.x
发表时间: 2012-09-01
期刊: MICROBIOLOGY AND IMMUNOLOGY
影响因子: 2.6
作者: [Matsumoto, Yuji, Kawamura, Yoshiki, Yoshikawa, Tetsushi]
通讯作者: Yoshikawa, Tetsushi
36
    Development of quantitative method by loop-mediated isothermal amplification (LAMP) using cycling probe.
    • 批准号:
      25460705
    • 项目类别:
      Grant-in-Aid for Scientific Research (C)
    • 资助金额:
      $3.24万
    • 财政年份:
      2013
    • 负责人:
      IHIRA Masaru
    • 依托单位:
    Development of a novel DNA amplification methods by loop-mediated isothermal amplification in human herpesvirus infections.
    海外基金