FluoRender: Rapid Quantitative Analysis and Adaptive Workflows for Fluorescence Microscopy Data in Fundamental Biomedical Research
FluoRender: Rapid Quantitative Analysis and Adaptive Workflows for Fluorescence Microscopy Data in Fundamental Biomedical Research
批准号:
10276704
负责人:
Charles Hansen
金额:
$114.38万
依托单位:
依托单位国家:
美国
项目类别:
财政年份:
2021
资助国家:
美国
项目状态:
已结题
起止时间:
2021-09-01 至 2024-08-31
关键词:
3-DimensionalAccelerationAddressAdoptedAugmented RealityBehaviorBiological ProcessBiologyBiomedical ResearchCellsCodeCollaborationsComputer softwareCustomDataData AnalysesDevelopmentDevicesElementsEnsureFeedbackFijiFluorescence MicroscopyHybridsImageImage AnalysisImmersionInternationalJavaKnowledgeLibrariesLinkMachine LearningMeasurementMicroscopyModelingModernizationMolecular ConformationMorphologyNatureOrganismPilot ProjectsProcessProtocols documentationResearchResearch PersonnelSoftware ToolsSourceSpeedStreamStructureSystemTechniquesTechnologyThree-dimensional analysisTimeTissuesTrainingUnited States National Institutes of HealthUniversitiesUpdateUtahVisualizationWorkanalysis pipelineaugmented reality headsetbasecomputerized data processingdesigndiverse dataflexibilityfundamental researchhead mounted displayhuman-in-the-loopimage processingimprovedinteractive toolinteroperabilitynovelopen sourceprototyperesponsestatisticssuccesstooltwo-dimensionalusabilityvirtual realityvirtual reality headset
中文摘要
总结
英文摘要
Summary
FluoRender is a software package for interactive visualization and analysis of multichannel and multidimensional
fluorescence microscopy data. This project will serve the pressing needs of biologists utilizing fluorescence microscopy for
flexible and reliable data analysis and address the problems in fundamental biomedical research that demands rapid
measurements and workflow prototyping. Specific Aim 1: Interactive and collaborative measurement and analysis of
large multidimensional microscopy data. We will add rapid measurement tools specifically designed for three pilot
studies of our close collaborators at the University of Utah. FluoRender will take full advantage of latest graphics
processing unit (GPU) computing techniques and streamed processing to handle large data at interactive speed, ensuring
the success of the collaborative projects. Specific Aim 2: Applying machine learning to user workflows and data analysis.
We will support diverse data analysis needs from FluoRender users and provide automatic workflow assembly using
machine learning. We will incorporate user interactions in a human-in-the-loop approach to address the problem of
insufficient training examples and enhance interpretability in machine learning. Specific Aim 3: Interoperability between
FluoRender and other popular open-source image analysis software. We will support invoking ImageJ/Fiji modules from
FluoRender user interface. Users will be able to apply familiar ImageJ/Fiji functions combined with FluoRender interactive
tools. Frequently accessed external functions will be converted to native FluoRender implementations to improve
efficiency and accuracy. Specific Aim 4: Immersive volumetric data presentation. We will support the augmented reality
(AR) headsets and holographic displays for immersive data analysis. These emerging display technologies will have more
natural user interactions than the virtual reality (VR) devices and be advantageous for analyzing 3D data in scientific
research.
期刊论文(0)
专著(0)
科研奖励(0)
会议论文
FluoRender: Visualization-Based and Interactive Analysis for Multichannel Microscopy Data
-
批准号:9916753
-
项目类别:
-
资助金额:$34.31万
-
财政年份:2017
-
负责人:Charles Hansen
-
依托单位:
Fluorender: An Imaging Tool for Visualization and Analysis of Confocal Data as Ap
-
批准号:8145953
-
项目类别:
-
资助金额:$31.4万
-
财政年份:2011
-
负责人:Charles Hansen
-
依托单位:
Fluorender: An Imaging Tool for Visualization and Analysis of Confocal Data as Ap
-
批准号:8477216
-
项目类别:
-
资助金额:$30.2万
-
财政年份:2011
-
负责人:Charles Hansen
-
依托单位:
Fluorender: An Imaging Tool for Visualization and Analysis of Confocal Data as Ap
-
批准号:8333341
-
项目类别:
-
资助金额:$31.4万
-
财政年份:2011
-
负责人:Charles Hansen
-
依托单位:
海外基金