Modulation of Viral Antigen Presentation in the Lung

肺部病毒抗原呈递的调节

• 批准号: 10436633
• 负责人: Anna Karolina Palucka
• 金额: $ 49.83万
• 依托单位: JACKSON LABORATORY
• 依托单位国家: 美国
• 财政年份: 2021
• 资助国家: 美国
• 起止时间: 2021-07-02 至 2022-02-28
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/10436633
• 关键词: 2019-nCoV; 3-Dimensional; Acute; Address; Administrative Supplement; Adult; Affect; Age; Alternative Splicing; Antigen Presentation; Antigens; Antiviral Response; Autoimmune Diseases; Award; B-Lymphocytes; Bacteria; Biology; Biomedical Engineering; Blood Cells; COVID-19; COVID-19 patient; Cell Line; Cell model; Cell physiology; Cells; Cellular biology; Child; Childhood; Childhood Asthma; Clinical; Code; Cohort Effect; Communication; Complement; Complex; Computational Biology; Computer Analysis; Coronavirus; Data Set; Dendritic Cells; Dimensions; Disease; Environment; Environmental Risk Factor; Epithelial; Epithelial Cells; Family; Funding; Future; Generations; Genes; Genetic Transcription; Genomics; Goals; Human; Immune; Immune System Diseases; Immune response; Immune system; Immunologics; Immunology; Immunology procedure; Individual; Infant; Infection; Inflammation; Influenza; Interferon Type I; Interferons; Interleukin-1; Invaded; Leukocytes; Long COVID; Lung; Lung diseases; Lymphocyte; Lymphoid Cell; Malignant neoplasm of lung; Messenger RNA; Molecular; Mucous Membrane; Natural Immunity; Parents; Pathway interactions; Patients; Pediatric cohort; Peptides; Peripheral; Peripheral Blood Mononuclear Cell; Phenotype; Production; Protein Isoforms; Proteins; Proteomics; Public Health; RNA; RNA Splicing; Recording of previous events; Research; Research Project Grants; Respiratory syncytial virus; Ribonucleoproteins; SARS-CoV-2 infection; Sampling; Severity of illness; Shapes; Small Nuclear RNA; Specificity; Spliceosomes; Structure; Structure of parenchyma of lung; Surface; Systemic Lupus Erythematosus; T cell response; T-Lymphocyte; Technology; The Jackson Laboratory; Tissues; Transcript; Vaccines; Viral Antigens; Viral Load result; Viral Respiratory Tract Infection; Virus; Virus Diseases; Work; adaptive immune response; adaptive immunity; antiviral immunity; base; bioprinting; cell type; cohort; comorbidity; coronavirus disease; design; detection method; follow-up; human model; human tissue; immune activation; immune function; imprint; improved outcome; influenzavirus; innovative technologies; insight; lung microbiome; mRNA Precursor; mRNA sequencing; microbiome; microbiota; monocyte; multidisciplinary; novel; pathogen; pediatric patients; programs; proteogenomics; respiratory virus; response; sensor; single-cell RNA sequencing; symptomatic COVID-19; technology development; tool; transcriptome; transcriptome sequencing; tumor; virtual

PROJECT SUMMARY (FUNDED PARENT AWARD, U19AI142733) We propose a U19 Cooperative Center on Human Immunology at The Jackson Laboratory (JAX CCHI) to elucidate the innate immune networks that shape adaptive immune responses to respiratory viral infections in the human lung. Epithelial barriers lie at the interface between host and environment, where they sense invading pathogen. Dendritic cells (DCs) present pathogen-derived antigens to T and B cells to induce immune responses. However, the impact of the human lung tissue environment on DC and other cells, such as the newly identified innate lymphoid cell (ILC) family, as well as bacteria-reactive MAIT cells, is not completely understood. An understudied environmental factor is the lung microbiome. Microbiota are known to critically modulate the function of immune cells, particularly at mucosal surfaces, but how this occurs in the lung is not fully addressed. The JAX CCHI seeks to address these critical questions using a multi-disciplinary experimental approach that will integrate immunology with epithelial cell biology along with genomic, cellular, functional and microbiome parameters identified in human lung tissues. Our overarching hypothesis is that the quality and magnitude of mucosal T cell responses to respiratory viral infections are determined by the cross- talk between microbiota, epithelial cells and leukocytes. To address this hypothesis, we structured the JAX CCHI around two integrated research projects focused on basic immunological mechanisms of lung antiviral immunity; a technology development project that will create sophisticated cellular models leveraging 3D bioprinting, gene editing tools and microbiome-immune assays to support project objectives; a sample core for storage and distribution of human tissues; and a microbiome core for specialized microbiome profiling, cultivation, and computational analysis. Our Center will bring together clinicians with experts in lung immunology, the microbiome, bioengineering, genomics and computational biology to achieve our goals and maximize the potential of this research. An administrative core will provide coordination, communication and oversight for the program. The goals of this CCHI are to: 1) Understand how the networks of epithelial cells and immune cells in the human lung regulate innate and adaptive immunity to respiratory viruses; 2) Define how inflammation driven by the microbiome dictates the steady state of tissue, i.e., immune set-point; 3) Determine if and how this immune set- point is altered in two pulmonary diseases, childhood asthma and adult lung cancer, which have a major impact on public health; and 4) Develop innovative technologies to model human lung-immune dynamics and elucidate molecular mechanisms, cell types and pathways key to lung antiviral responses. Impact: Through studies focused on the sensors, inducers and modulators of antiviral immunity in the human lung, our CCHI will contribute insights that could help improve outcomes for infectious and other immune diseases that originate in or secondarily impact the lung.

项目摘要（资助的奖学金，U19 AI 142733） 我们建议在杰克逊实验室（JAX CCHI）建立一个U19人类免疫学合作中心， 阐明先天免疫网络，形成适应性免疫反应，呼吸道病毒感染， 人类的肺上皮屏障位于宿主和环境之间的界面，在那里它们感觉到入侵 病原体树突状细胞（Dendritic cells，DC）将病原体来源的抗原呈递给T和B细胞以诱导免疫应答。 然而，人肺组织环境对DC和其他细胞的影响，如新发现的 先天性淋巴样细胞（ILC）家族以及细菌反应性MAIT细胞尚未完全了解。一个 研究不足的环境因素是肺部微生物组。已知微生物群会严重调节 免疫细胞的功能，特别是在粘膜表面，但这是如何发生在肺没有完全解决。 JAX CCHI试图使用多学科实验方法来解决这些关键问题， 将免疫学与上皮细胞生物学沿着与基因组，细胞，功能和微生物组相结合 在人肺组织中鉴定的参数。我们的首要假设是， 粘膜T细胞对呼吸道病毒感染的反应是由微生物群之间的相互作用决定的， 上皮细胞和白细胞。为了解决这个假设，我们围绕两个集成的 研究项目集中在肺抗病毒免疫的基本免疫机制;一种技术 该开发项目将利用3D生物打印，基因编辑工具创建复杂的细胞模型 和微生物组免疫测定，以支持项目目标;用于储存和分发 人体组织;以及用于专门微生物组分析、培养和计算的微生物组核心。 分析.我们的中心将汇集临床医生和肺部免疫学、微生物组、 生物工程，基因组学和计算生物学，以实现我们的目标，并最大限度地发挥这一潜力， research.一个行政核心将为该方案提供协调、沟通和监督。的 本CCHI的目标是：1）了解人类肺部上皮细胞和免疫细胞的网络如何 调节对呼吸道病毒的先天性和适应性免疫; 2）定义炎症是如何由 微生物组决定了组织的稳定状态，即，免疫设定点; 3）确定该免疫设定点是否以及如何- 在两种肺部疾病中，即儿童哮喘和成人肺癌， 4）开发创新技术，模拟人类肺部免疫动力学， 分子机制、细胞类型和途径是肺抗病毒反应的关键。影响：通过研究 我们的CCHI专注于人类肺部抗病毒免疫的传感器、诱导剂和调节剂， 这些见解可以帮助改善源自或来自以下疾病的传染病和其他免疫疾病的结果： 其次影响肺部。