Modeling gene regulatory mechanisms contributing to the evolution of the human cerebral cortex

模拟促进人类大脑皮层进化的基因调控机制

• 批准号: 10464116
• 负责人: Mary Baumgartner
• 金额: $ 6.98万
• 依托单位: YALE UNIVERSITY
• 依托单位国家: 美国
• 财政年份: 2022
• 资助国家: 美国
• 起止时间: 2022-09-01 至 2025-08-31
• 项目状态: 未结题
• 来源: https://reporter.nih.gov/project-details/10464116
• 关键词: Address; Adult; Affect; Binding; Bioinformatics; Brain; Cell Count; Cell Culture Techniques; Cell Cycle; Cells; Cerebral cortex; Cerebrum; ChIP-seq; Chromatin; Clinical; Cognition; Comparative Study; Complement; Data; Development; Developmental Delay Disorders; Developmental Gene; Disease; Embryo; Enhancers; Epigenetic Process; Etiology; Event; Evolution; Exhibits; Fellowship; Foundations; Gene Expression; Gene Expression Regulation; Genes; Genetic; Genetic Transcription; Genome; Goals; Growth; Heterogeneity; Higher Order Chromatin Structure; Histologic; Human; Human Genetics; Impaired cognition; Kinetics; Knockout Mice; Knowledge; Length; Link; Mediating; Methods; Modeling; Molecular; Morphology; Mus; Mutation; Neurobiology; Neurodevelopmental Disorder; Neuroglia; Neurons; Organoids; Orthologous Gene; Pan Genus; Phenotype; Primates; Production; Quantitative Reverse Transcriptase PCR; Radial; Regulation; Regulator Genes; Regulatory Element; Reporting; Research; Resolution; Role; Shapes; Speed; Variant; Work; autism spectrum disorder; cell behavior; cell type; chromosome conformation capture; epigenetic profiling; fetal; functional genomics; gene network; gene regulatory network; genome-wide; histone modification; human fetal brain; humanized mouse; in vivo; innovation; mouse model; nerve stem cell; neurogenesis; novel; overexpression; programs; recruit; relating to nervous system; risk variant; stem cell proliferation; stem cells; success; transcription factor; transcriptomics

Project Summary The vast expansion of the human cerebral cortex distinguishes us from our primate relatives, and this cortical expansion is the foundation of uniquely human higher-order cognition. Numerous developmental innovations, such as increased proliferation of cortical progenitor cells, contributed to this cortical growth. Ultimately, these developmental innovations arose from genetic changes in the human lineage, which altered the molecular and cellular programs underpinning development. Understanding the gene regulatory networks that specifically inform human cortical development and cortical size is crucial for understanding the etiology of neurodevelopmental disorders, which often present with cognitive impairment. Efforts to identify human-specific genetic changes have revealed Human Accelerated Regions (HARs), which are highly conserved regulatory elements that exhibit a high rate of human-specific sequence change. A growing body of evidence implicates HARs in cortical development and evolution. In particular, the HAR HACNS205 has (i) human-biased accessibility in cerebral organoids, compared to chimpanzee, and evidence of enhancer activity; (ii) an essential role in human neural stem cell proliferation; and (iii) a known target gene in the fetal human cortex, BRN2, a transcription factor that regulates corticogenesis and has human-biased expression in cortical progenitor cells relative to chimp. BRN2 is an autism risk gene, and its target genes display enrichment for autism risk genes. In addition, clinical work has linked BRN2 mutations to global developmental delay and cognitive impairment. BRN2 has also recently been implicated in human cortical evolution. Overexpression studies indicate BRN2 is important for designating neural progenitor cell identity, the timing of neurogenesis, and the production of specific neuronal subtypes. However, the role of HACNS205 in human cortical development is not clear; moreover, the role of BRN2 in early cortical development has not been reported. The goal of this proposal is to address these gaps in the field, by using a humanized mouse model to study how HACNS205 impacts BRN2 expression levels and BRN2 transcription factor binding, and how these primary molecular effects shape gene expression, molecular networks, progenitor cell behavior, and the timing of key events in cortical development. Specifically, I will employ genome-wide epigenetic and single-cell transcriptomic analyses of embryonic cortical development. These results will then be leveraged to perform targeted phenotypic analysis of the developing cortex in these mice, to identify HACNS205-driven shifts in progenitor cell behavior, neurogenesis, and ultimately cortical morphology. The applicant’s long-term goal is to study the emergence of novel cell types in brain evolution. This fellowship will aid the applicant in developing the expertise in bioinformatics and evolutionary, regulatory, and functional genomics that will greatly bolster her success in this line of research, complementing her current expertise in neurobiology and cortical development.

项目摘要 人类大脑皮层的巨大扩张使我们有别于灵长类亲戚， 扩展是人类独有的高级认知的基础。许多发展创新， 例如皮质祖细胞增殖的增加，促进了这种皮质生长。最终，这些 发展创新源于人类谱系的遗传变化，这些变化改变了分子和 支持发展的细胞程序了解基因调控网络， 了解人类皮质发育和皮质大小对于了解病因至关重要 神经发育障碍，通常表现为认知障碍。努力识别人类特异性 遗传变化揭示了人类加速区（HAR），这是高度保守的调控区域， 显示出高人类特异性序列变化率的元件。越来越多的证据表明 皮质发育和进化中的HARs。特别是，HAR HACNS 205具有（i）人类偏见 与黑猩猩相比，大脑类器官的可及性和增强子活性的证据;（ii）一个必要的 在人神经干细胞增殖中的作用;和（iii）胎儿人皮质中的已知靶基因BRN 2， 一种调节皮质生成并在皮质祖细胞中具有人类偏好表达的转录因子 相对于黑猩猩。BRN 2是一个自闭症风险基因，其靶基因显示出自闭症风险基因的富集。 此外，临床工作将BRN 2突变与全面发育迟缓和认知障碍联系起来。 BRN 2最近也与人类皮质进化有关。过表达研究表明BRN 2是 重要的是指定神经前体细胞的身份，神经发生的时间，和特定的生产， 神经元亚型然而，HACNS 205在人类皮质发育中的作用尚不清楚;此外， BRN 2在早期皮质发育中的作用尚未报道。该提案的目的是解决这些问题， 通过使用人源化小鼠模型研究HACNS 205如何影响BRN 2表达水平， 和BRN 2转录因子结合，以及这些主要分子效应如何影响基因表达， 分子网络、祖细胞行为和皮质发育中关键事件的时间。具体地说， 我将采用全基因组表观遗传学和单细胞转录组学分析胚胎皮质发育。 然后将利用这些结果对这些人正在发育的皮质进行有针对性的表型分析 小鼠，以确定HACNS 205驱动的祖细胞行为、神经发生和最终皮质的变化 形态学申请人的长期目标是研究大脑进化中新细胞类型的出现。这 奖学金将帮助申请人发展生物信息学和进化，监管和 功能基因组学，这将大大加强她在这方面的研究成功，补充她目前的 神经生物学和大脑皮层发育方面的专业知识。