Synergy Core (SynC)
Synergy Core (SynC)
批准号:
10493704
负责人:
Eric Otto Johnson
金额:
$51.38万
依托单位国家:
美国
项目类别:
财政年份:
2022
资助国家:
美国
项目状态:
未结题
起止时间:
2022-09-15 至 2027-05-31
关键词:
AddressAnimal ModelBiologicalCloud ComputingCollaborationsCommunitiesCommunity IntegrationCommunity ServicesDataData AnalysesData SetData Storage and RetrievalDevelopmentDoctor of PhilosophyDocumentationEnsureEnvironmentEpidemiologyEquationGene TargetingGeneticGenomicsHigh Performance ComputingHumanImageIndividualInfrastructureIngestionInternationalIntuitionLaboratoriesLinkage DisequilibriumMeta-AnalysisMetadataMethodsMissionMultiomic DataNeurobiologyOnline SystemsOpiate AddictionPerformancePhenotypePopulationPopulation HeterogeneityPrincipal InvestigatorProceduresQuality ControlResearchResearch PersonnelResolutionResource InformaticsResourcesSamplingSecureSourceStandardizationStructureStudy modelsSumSupercomputingTechniquesTechnologyTestingVariantaddictionanalysis pipelinebasecomputerized data processingcost effectivedata ingestiondata pipelinedata portaldata sharingdata sharing networksdata visualizationexperimental studyfollow-upgene networkgenome wide association studyhuman datahuman modelimprovedmemberonline resourcepower analysisrepositorystatisticssynergismtooluser-friendlyweb portalworking group
中文摘要
项目概要/摘要
Synergy Core(SynC)将支持集成组学中心的总体使命,
阿片类药物成瘾的神经生物学理解(ICAN)发现和分享阿片类药物的生物驱动因素
成瘾(OA)通过协调统一和严格的方法来分析整个ICAN,提供高度
用于ICAN分析的先进计算基础设施,将外部OA数据与ICAN数据相结合,以及
创建一个独特的国家资源,与研究共享ICAN分析的数据和结果
社区通过用户友好的基于网络的数据门户,mapOA。每个ICAN项目都将提供重要的立场-
单独的发现,但结合和整合项目将提高统计能力,通过Meta,
分析,阐明了统计关联的潜在功能(例如,将重要位点映射到
功能性基因靶点),通过协调人类基因组,
研究和动物模型研究,并最终产生和测试有关假定机制的假设。
对于ICAN和该领域在理解导致OA的个体生物学变异方面的飞跃,
组学整合是关键。SynC将提供跨项目和研究社区的集成,
通过实现以下具体目标促进科学协同:
(1)使ICAN分析与中心指导委员会设定的里程碑保持一致,并协调
开发分析技术、标准、程序和文件;(2)建立和维护
集中式高性能计算环境和用于数据摄取和组学的标准化管道
分析;(3)摄取和标准化外部OA数据集,并在ICAN中进行综合分析,
外部数据;以及(4)开发一个方便用户的网上资源MapOA,以分享综合OA组学
和ICAN内的成像数据,并与更广泛的研究社区。
实现SynC目标将通过提供以下服务,极大地提高ICAN项目的协同集成
研究人员和研究社区与mapOA轻松访问强大的质量控制艾德和协调
所有项目的结果和获取的公开数据;提供标准化的HPC环境,
管道;并进行超出个别项目的综合分析。SynC是制造
ICAN超过了其单个项目的总和。SynC团队由多名主要研究人员共同领导
Eric Otto约翰逊博士和Nathan Gaddis博士,他们带来了多站点联盟协调方面的专业知识;
成瘾研究;流行病学;高性能云计算基础设施;管道和工作流程
开发;数据结构化,整合和处理;不同人群的组学数据分析;以及
数据可视化他们得到了广泛的统计学家,生物信息学家和开发人员团队的支持。
他们将共同确保SynC最大限度地发挥ICAN研究对OA生物驱动因素的影响。
英文摘要
PROJECT SUMMARY/ABSTRACT
The Synergy Core (SynC) will support the overall mission of the Integrative Omics Center for Accelerating
Neurobiological Understanding of Opioid Addiction (ICAN) to discover and share biological drivers of opioid
addiction (OA) by coordinating a unified and rigorous approach to analyses across ICAN, providing highly
advanced computing infrastructure for ICAN analyses, combining external OA data with ICAN data, and
creating a unique national resource that shares data and results from ICAN analyses with the research
community via a user friendly web-based data portal, mapOA. Each ICAN Project will provide important stand-
alone discoveries but combining and integrating across Projects will enhance statistical power through meta-
analyses, illuminate the potential function of statistical associations (for example, mapping significant loci to
functional gene targets), provide a biologically integrated interpretation through the harmonization of human
studies and animal model studies, and ultimately generate and test hypotheses about putative mechanisms.
For ICAN and the field to leap forward in understanding the individual biological variation that leads to OA,
omics integration is key. The SynC will provide cross-project and research community integration that
facilitates scientific synergy by accomplishing the following Specific Aims:
(1) align ICAN analyses with milestones set by the Center Steering Committee and coordinate
development of analytic techniques, standards, procedures, and documentation; (2) establish and maintain a
centralized high-performance computing environment and standardized pipelines for data ingestion and omics
analyses; (3) ingest and standardize external OA datasets and conduct integrative analyses across ICAN and
external data; and (4) develop a user-friendly web-based resource, mapOA, for sharing of integrated OA omics
and imaging data within ICAN and with the broader research community.
Achieving the SynC aims will dramatically increase synergistic integration of ICAN Projects by providing
investigators and the research community with mapOA for easy access to robustly QC’ed and harmonized
results from all projects and ingested publicly available data; providing a standardized HPC environment and
pipelines; and conducting integrative analyses beyond those in individual Projects. The SynC is key to making
ICAN more than the sum of its individual Projects. The SynC team is co-led by Multiple Principal Investigators
Eric Otto Johnson, PhD, and Nathan Gaddis, PhD, who bring expertise in multisite consortia coordination;
addiction research; epidemiology; high performance cloud computing infrastructure; pipeline and workflow
development; data structuring, integration, and processing; omics data analysis in diverse populations; and
data visualization. They are supported by a broad team of statisticians, bioinformaticists, and developers.
Together, they will ensure that SynC maximizes the impact of ICAN research into the biological drivers of OA.
期刊论文(0)
专著(0)
科研奖励(0)
会议论文
Integrative Omics Center for Accelerating Neurobiological Understanding of Opioid Addiction (ICAN)
-
批准号:10493702
-
项目类别:
-
资助金额:$225.97万
-
财政年份:2022
-
负责人:Eric Otto Johnson
-
依托单位:
Administrative Core (AC)
-
批准号:10493703
-
项目类别:
-
资助金额:$23.55万
-
财政年份:2022
-
负责人:Eric Otto Johnson
-
依托单位:
Harnessing Knowledge of Gene Function in Brain Tissue for Discovering Biology Underlying Heroin Addiction
-
批准号:10116351
-
项目类别:
-
资助金额:$77.5万
-
财政年份:2017
-
负责人:Eric Otto Johnson
-
依托单位:
Enhancing Discovery of HIV Host Genetics using Drug Abuse and other Interactions
-
批准号:9297254
-
项目类别:
-
资助金额:$68.01万
-
财政年份:2014
-
负责人:Eric Otto Johnson
-
依托单位:
Enhancing Discovery of HIV Host Genetics using Drug Abuse and other Interactions
-
批准号:8799728
-
项目类别:
-
资助金额:$76.35万
-
财政年份:2014
-
负责人:Eric Otto Johnson
-
依托单位:
Genome-Wide Association Study of Heroin Abuse: A Multiethnic Study
-
批准号:7761906
-
项目类别:
-
资助金额:$35.2万
-
财政年份:2009
-
负责人:Eric Otto Johnson
-
依托单位:
Genome-Wide Association Study of Heroin Abuse: A Multiethnic Study
-
批准号:8299258
-
项目类别:
-
资助金额:$41.05万
-
财政年份:2009
-
负责人:Eric Otto Johnson
-
依托单位:
Genome-Wide Association Study of Heroin Abuse: A Multiethnic Study
-
批准号:8325514
-
项目类别:
-
资助金额:$39.28万
-
财政年份:2009
-
负责人:Eric Otto Johnson
-
依托单位:
Genome-Wide Association Study of HIV-1 Host Genetics Among Injection Drug Users
-
批准号:7595482
-
项目类别:
-
资助金额:$72.27万
-
财政年份:2008
-
负责人:Eric Otto Johnson
-
依托单位:
Genome-Wide Association Study of HIV-1 Host Genetics Among Injection Drug Users
-
批准号:7933511
-
项目类别:
-
资助金额:$8.82万
-
财政年份:2008
-
负责人:Eric Otto Johnson
-
依托单位:
Genome-Wide Association Study of HIV-1 Host Genetics Among Injection Drug Users
-
批准号:7880028
-
项目类别:
-
资助金额:$72.34万
-
财政年份:2008
-
负责人:Eric Otto Johnson
-
依托单位:
Genome-Wide Association Study of HIV-1 Host Genetics Among Injection Drug Users
-
批准号:8286311
-
项目类别:
-
资助金额:$63.84万
-
财政年份:2008
-
负责人:Eric Otto Johnson
-
依托单位:
Genome-Wide Association Study of HIV-1 Host Genetics Among Injection Drug Users
-
批准号:7687914
-
项目类别:
-
资助金额:$73.09万
-
财政年份:2008
-
负责人:Eric Otto Johnson
-
依托单位:
Genome-Wide Association Study of HIV-1 Host Genetics Among Injection Drug Users
-
批准号:8104014
-
项目类别:
-
资助金额:$56.56万
-
财政年份:2008
-
负责人:Eric Otto Johnson
-
依托单位:
Pathway among Co-occurring Mental/Substance Use Disorder
-
批准号:7044216
-
项目类别:
-
资助金额:$18.06万
-
财政年份:2005
-
负责人:Eric Otto Johnson
-
依托单位:
Examining Pathways among Co-occurring Mental and Substance Use Disorders
-
批准号:7126350
-
项目类别:
-
资助金额:$21.77万
-
财政年份:2005
-
负责人:Eric Otto Johnson
-
依托单位:
Examining Pathways among Co-occurring Mental and Substance Use Disorders
-
批准号:7278766
-
项目类别:
-
资助金额:$21.3万
-
财政年份:2005
-
负责人:Eric Otto Johnson
-
依托单位:
EPIDEMIOLOGY OF INSOMNIA & MENTAL ILLNESS IN ADOLESCENCE
-
批准号:6539085
-
项目类别:
-
资助金额:$32.25万
-
财政年份:2000
-
负责人:Eric Otto Johnson
-
依托单位:
EPIDEMIOLOGY OF INSOMNIA & MENTAL ILLNESS IN ADOLESCENCE
-
批准号:7047397
-
项目类别:
-
资助金额:$12.55万
-
财政年份:2000
-
负责人:Eric Otto Johnson
-
依托单位:
EPIDEMIOLOGY OF INSOMNIA & MENTAL ILLNESS IN ADOLESCENCE
-
批准号:6088118
-
项目类别:
-
资助金额:$20.88万
-
财政年份:2000
-
负责人:Eric Otto Johnson
-
依托单位:
海外基金