END JOINING REACTION IN DNA REPAIR & V(D)J RECOMBINATION

结束 DNA 修复中的连接反应

• 批准号: 6019487
• 负责人: GILBERT CHU
• 金额: $ 20.58万
• 依托单位: STANFORD UNIVERSITY
• 依托单位国家: 美国
• 财政年份: 1998
• 资助国家: 美国
• 起止时间: 1998-08-01 至 2002-07-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/6019487
• 关键词: DNA binding protein; DNA repair; adenosinetriphosphatase; cell free system; enzyme activity; gel mobility shift assay; gene mutation; genetic recombination; site directed mutagenesis; tissue /cell culture; transfection

DESCRIPTION (Adapted from Investigator's abstract): If DNA double-strand breaks (DSBs) are repaired improperly, they may lead to chromosome translocations and cancer. DSBs are created by exogenous agents such as ionizing radiation (IR), or by the endogenous process of V(D)J recombination, which rearranges immunoglobulin and T cell receptor genes to generate immunological diversity. Remarkably, mammalian cells utilize the same end-joining reaction for both DSB repair and V(D)J recombination. The end-joining reaction must include steps for synapsis of two DNA ends, processing of the ends for alignment by microhomology base pairing, and ligation into a covalently linked DNA duplex. Proteins required for this process have been identified by this and other laboratories and include DNA-dependent protein kinase (DNA-PK) and XRCC4. DNA-PK consists of a regulatory subunit, Ku, which binds to DNA ends, and a catalytic subunit, p460, which is activated by DNA ends. XRCC4 may act late in the pathway by stimulating the final ligation reaction. A model has been formulated for how Ku and p460 participate in end-joining. To test the model, the specific aims of this proposal are to investigate: 1. The roles of Ku and p460 in the synapsis of DNA ends. A super-large complex of DNA, Ku and p460 was detected and will be characterized to determine if it represents the synapsis of 2 DNA molecules. A 19 Angstrom resolution structure of p460 was obtained, suggesting synapsis may occur in a parallel orientation. Experiments will distinguish between parallel and antiparallel synapsis. 2. The roles of Ku and p460 in the processing of DNA ends. DNA-PK phosphorylation of Ku activates its ATPase activity, which will be tested for possible roles in processing DNA ends: strand exchange, end-unwinding, unwinding coupled to microhomology base pairing, and opening hairpin ends. Ku mutated in its ATP binding motifs will be transfected into Ku mutant cells to test the role of the ATPase in vivo. 3. Later steps in the end-joining reaction. The complex of Ku and p460 on DNA ends was discovered to recruit additional factors. These factors will be identified by protein purification and by testing specific candidates, including XRCC4, DNA ligases I and IV, RPA, HMG1 and HMG2. Once the initial steps have been characterized, a search will be conducted for the complete end-joining reaction in vitro. Ultimately, these studies will lead to a molecular description of both DSB repair and V(D)J recombination, leading to deeper insight into both cancer and the human immune system.

描述（改编自研究者摘要）：如果DNA双链 断裂（DSB）修复不当，可能导致染色体 易位和癌症 DSB是由外源性因素产生的， 电离辐射（IR）或V（D）J的内源性过程 重组，重新排列免疫球蛋白和T细胞受体基因， 产生免疫多样性。 值得注意的是，哺乳动物细胞利用 DSB修复和V（D）J重组的末端连接反应相同。 的 末端连接反应必须包括两个DNA末端的突触步骤， 通过微同源碱基配对处理末端以进行比对，和 连接成共价连接的DNA双链体。 所需的蛋白质 该实验室和其他实验室已经确定了一些工艺，包括 DNA依赖性蛋白激酶（DNA-PK）和XRCC 4。 DNA-PK由一个 调节亚基Ku，其结合DNA末端，和催化亚基， p460，它被DNA末端激活。 XRCC 4可能在通路的后期起作用， 刺激最终的连接反应。 已经制定了一个模型， Ku和p460如何参与末端连接。 为了测试该模型， 这项建议的目的是调查： 1. Ku和p460在DNA末端突触中的作用 的超大型 检测到DNA、Ku和p460的复合物，并将其表征为 确定它是否代表两个DNA分子的突触。 A 19埃 p460的分辨结构，提示突触可能发生在 平行的方向。 实验将区分平行和 反平行突触 2. Ku和p460在DNA末端加工中的作用 DNA-PK Ku的磷酸化激活其ATP酶活性，这将被测试 在处理DNA末端中可能的作用：链交换，末端解旋， 与微同源碱基配对偶联的解旋和打开发夹末端。 在其ATP结合基序中突变的Ku将被转染到Ku突变体中， 细胞来测试ATP酶在体内的作用。 3. 末端连接反应的后续步骤。 Ku与p460的复合物在 DNA末端被发现可以招募额外的因子。 这些因素将 通过蛋白质纯化和通过测试特定候选物来鉴定， 包括XRCC 4、DNA连接酶I和IV、RPA、HMG 1和HMG 2。 一旦最初的 步骤已经描述，将进行搜索，以获得完整的 体外末端连接反应。 最终，这些研究将导致 DSB修复和V（D）J重组的分子描述，导致 更深入地了解癌症和人类免疫系统。