SynDNAStore. Synthetic biology innovation around the design of DNA molecules for digital archiving

SynDNAStore。

• 批准号: BB/L023741/1
• 负责人: Nick Goldman
• 金额: $ 65.2万
• 依托单位: European Bioinformatics Institute
• 依托单位国家: 英国
• 项目类别: Research Grant
• 财政年份: 2015
• 资助国家: 英国
• 起止时间: 2015 至 无数据
• 项目状态: 已结题
• 来源: https://gtr.ukri.org/projects?ref=BB%2FL023741%2F1
• 关键词: SynDNAStore.; Synthetic; biology; innovation; around

There is an increasing amount of information stored in digital media; films, TV programs, pictures, mp3s, PDFs and others. Indeed, a considerable amount of information is "born digital" in that it was generated at the outset in a digital media (for example, digital cameras). Despite the every day use of digital storage methods for this information, it is far more complex to store digital information over a long period of time, ie, over decades. Current best practice involves storing information on magnetic tape, and regularly transitioning between upgrades of the tape technology, between 5 to 10 years. DNA, the chemical which stores the information passed on between generations is a naturally digital storage scheme; it has four possible "letters" (A, T, G and C). Because of the extensive research that has occurred over the last forty years, we can easily read, cut, copy and splice DNA together. More recently it has become feasible to also write DNA to a design of your choosing. Previously we showed that we could use DNA for a very different purpose than store genetic information, namely to store any digital information. In our first trial we stored all of Shakespeare's sonnets, a MP3 extract of Martin Luther King's "I have a dream" speech, a JPG of a picture of the EBI Building, and the PDF of the Watson and Crick publication in Nature in 1953. We can be confident that this information can survive for over 1,000 years.In this proposal we want to expand on this work to exploit the fact that one can copy accurately and cheaply DNA information. To do this we need to know at far better precision the engineering properties of DNA enzymes - do they work evenly on every sequence? What is their precise error rate? Using this information we will be able to design a Digital DNA store which can be replicated 100s or 1000s of times easily. As a proof of concept we would also like to store a more substantial amount of culturally important information in DNA - for example, the entire works of Shakespeare, or the UN declaration of human rights. With this new work, and with the expected advances in synthesis we expect to be able to store a substantial amount. To choose the precise works we store we will engage with the public, and also design an appropriate physical storage location.

越来越多的信息存储在数字媒体中;电影，电视节目，图片，MP3，PDF等。事实上，相当多的信息是“天生的数字”，因为它是在数字媒体（例如，数码相机）中产生的。尽管每天都在使用数字存储方法来存储这些信息，但在很长一段时间内（即几十年）存储数字信息要复杂得多。目前的最佳做法是将信息存储在磁带上，并定期在磁带技术的升级之间进行转换，时间为5至10年。DNA是一种天然的数字存储方案，它有四个可能的“字母”（A，T，G和C）。由于过去四十年来的广泛研究，我们可以很容易地阅读、切割、复制和拼接DNA。最近，也可以将DNA写入您选择的设计。之前我们展示了我们可以将DNA用于与存储遗传信息非常不同的目的，即存储任何数字信息。在我们的第一次试验中，我们存储了莎士比亚的所有十四行诗，马丁·路德·金的“我有一个梦想”演讲的MP3摘录，EBI大楼图片的JPG，以及沃森和克里克1953年在《自然》杂志上发表的PDF。我们可以确信，这些信息可以保存1,000多年。在这项提议中，我们希望扩大这项工作，利用人们可以准确而廉价地复制DNA信息的事实。要做到这一点，我们需要更精确地了解DNA酶的工程特性--它们是否均匀地作用于每个序列？准确的错误率是多少？利用这些信息，我们将能够设计一个可以轻松复制100或1000次的数字DNA存储。作为概念验证，我们还希望在DNA中存储更大量的文化重要信息-例如，莎士比亚的全部作品或联合国人权宣言。有了这项新的工作，以及预期的合成进展，我们预计能够储存大量的。为了选择我们存储的精确作品，我们将与公众接触，并设计一个适当的物理存储位置。

项目成果

Improving communication for interdisciplinary teams working on storage of digital information in DNA.

• DOI: 10.12688/f1000research.13482.1
• 发表时间: 2018
• 期刊: F1000Research
• 作者: Hesketh EE;Sayir J;Goldman N
• 通讯作者: Goldman N