The farm environment: an overlooked source of Mycobacterium bovis?

农场环境：被忽视的牛分枝杆菌来源？

• 批准号: BB/N004655/1
• 负责人: Elizabeth Wellington
• 金额: $ 119.57万
• 依托单位: University of Warwick
• 依托单位国家: 英国
• 项目类别: Research Grant
• 财政年份: 2016
• 资助国家: 英国
• 起止时间: 2016 至 无数据
• 项目状态: 已结题
• 来源: https://gtr.ukri.org/projects?ref=BB%2FN004655%2F1
• 关键词: farm; environment; overlooked; source; Mycobacterium

Bovine tuberculosis (bTB) is a cattle disease which can be transmitted to people (although human infections are rare in the UK). Despite decades of efforts to eradicate it, the disease has spread across much of western Britain. The disease seems to persist because the tests used to detect and remove infected cattle miss some infected animals, and because wildlife (especially badgers) can also catch the disease and pass it on to cattle.Most cattle catch bTB by breathing in specks of mucus or saliva from other cattle. However, new research shows that badgers avoid cattle, and very seldom come close enough to transmit (or catch) the disease in this way. Because there is very strong evidence that badgers give bTB to cattle, and that cattle give bTB to badgers, this finding strongly suggests that cattle can both transmit and catch bTB without coming into close contact with another animal.Both cattle and badgers excrete bTB bacteria, which can survive in the environment for weeks or months. We can quantify these bacteria in the environment by using genetic methods which count the number of copies of bacterial DNA in a sample of soil, faeces, or water. Our preliminary studies have detected such bacteria in cattle slurry, and in the soil of fields where cattle graze, as well as in badger faeces collected on cattle farms. It is likely that cattle can catch bTB from these sources; however, current bTB management does little to address the risk posed by bTB in the environment.Our project aims to address six research questions:(1) Where in the farm environment are bTB bacteria concentrated?(2) Are the bTB bacteria found in the environment still alive and hence likely to infect cattle?(3) To what extent do cattle come into contact with bTB bacteria in the environment?(4) Does spreading slurry onto fields contribute to bTB bacteria in the environment?(5) Do the bTB bacteria found in the environment come mostly from cattle or from badgers?(6) How might farms be managed to avoid cattle catching bTB from the environment? Our project will seek to answer these six questions by a careful study of 20 farms located in Cornwall, where rates of cattle bTB are very high. Our team will collect thousands of samples of cattle dung, slurry, soil and badger faeces, as well as swabs from inside barns and cattle troughs. These samples will be brought back to our laboratory where we shall extract DNA from them and count the numbers of copies of bTB genetic code from each one. These analyses will allow us to map where on the farms bTB bacteria are most abundant, and to explore whether the numbers and distribution of bacteria vary between seasons. At the same time, we shall track the movements of both cattle and muckspreaders (used to spread slurry) using technology similar to that present in vehicle satnav systems. Tracking muckspreaders will help us to assess whether bTB is more abundant in fields where slurry has been spread recently, and tracking cattle will help us to assess where they are at greatest risk of encountering bTB bacteria in the environment.We shall test whether bTB found in the environment is still alive and also explore how long bTB bacteria survive in cattle dung and badger faeces held inside small open-air enclosures inaccessible to animals.To assess where environmental bacteria come from, we plan to compare the DNA of bTB bacteria found in soil, barns and troughs with that of bacteria known to have come from cattle (found in fresh cattle dung) and from badgers (found in fresh badger faeces). If, for example, the DNA strains found in soil were similar to those found in cattle dung, but different from those found in badger faeces, it would suggest that most environmental contamination comes from cattle.To ensure that our research findings can be translated into practical guidance for farm management, our project steering committee includes representatives from the farming industry and the veterinary profession.

牛结核病（bTB）是一种可以传染给人的牛疾病（尽管人类感染在英国很罕见）。尽管几十年来一直在努力根除这种疾病，但这种疾病已经蔓延到英国西部的大部分地区。这种疾病似乎会持续存在，因为用于检测和清除受感染牛的测试遗漏了一些受感染的动物，而且因为野生动物（特别是獾）也会感染这种疾病并将其传播给牛。大多数牛通过呼吸其他牛的粘液或唾液而感染bTB。然而，新的研究表明，獾避免牛，很少接近足以传播（或捕获）这种疾病。因为有非常强有力的证据表明獾把bTB传给牛，牛把bTB传给獾，这一发现有力地表明，牛可以在不与另一种动物密切接触的情况下传播和感染bTB。牛和獾都排泄出bTB细菌，这些细菌可以在环境中存活数周或数月。我们可以通过使用遗传方法来量化环境中的这些细菌，这些方法可以计算土壤，粪便或水样本中细菌DNA的拷贝数。我们的初步研究已经在牛的泥浆中检测到这种细菌，在牛放牧的田地的土壤中，以及在养牛场收集的獾粪便中。牛很可能会从这些来源感染bTB;然而，目前的bTB管理并没有解决bTB在环境中造成的风险，我们的项目旨在解决六个研究问题：（1）在农场环境中的bTB细菌集中？(2)在环境中发现的bTB细菌是否仍然活着，因此可能感染牛？(3)牛在多大程度上与环境中的bTB细菌接触？(4)将泥浆撒到田地上会导致环境中的bTB细菌吗？(5)环境中发现的bTB细菌主要来自牛还是獾？(6)如何管理农场以避免牛从环境中感染bTB？我们的项目将通过对康沃尔郡20个农场的仔细研究来回答这六个问题，康沃尔郡的牛bTB率非常高。我们的团队将收集成千上万的牛粪、泥浆、土壤和獾粪便样本，以及谷仓和牛槽内的拭子。这些样本将被带回我们的实验室，在那里我们将从中提取DNA，并计算每个样本中bTB遗传密码的拷贝数。这些分析将使我们能够绘制出农场中bTB细菌最丰富的地方，并探索细菌的数量和分布是否在季节之间变化。与此同时，我们将使用类似于车辆卫星导航系统的技术跟踪牛和粪便散布机（用于散布泥浆）的移动。跟踪泥浆散布者将有助于我们评估bTB是否在最近散布泥浆的油田中更丰富，追踪牛只将有助我们评估它们在环境中遇到结核杆菌的风险最大的地方。我们将测试在环境中发现的结核杆菌是否仍然存活，并探索结核杆菌在牛粪和獾粪便中存活多久，这些粪便放在小开口-为了评估环境细菌的来源，我们计划将在土壤、谷仓和水槽中发现的bTB细菌的DNA与已知来自牛（在新鲜牛粪中发现）和獾（在新鲜獾粪便中发现）的细菌的DNA进行比较。例如，如果在土壤中发现的DNA菌株与牛粪中发现的DNA菌株相似，但与獾粪便中发现的DNA菌株不同，则表明大多数环境污染来自牛。为了确保我们的研究结果可以转化为农场管理的实际指导，我们的项目指导委员会包括农业和兽医专业的代表。

项目成果

Erratum for Gudeta et al., The Soil Microbiota Harbors a Diversity of Carbapenem-Hydrolyzing ß-Lactamases of Potential Clinical Relevance.

Gudeta 等人的勘误，土壤微生物群中存在具有潜在临床相关性的碳青霉烯水解内酰胺酶的多样性。

• DOI: 10.1128/aac.00375-16
• 发表时间: 2016
• 期刊: Antimicrobial agents and chemotherapy
• 影响因子: 4.9
• 作者: Gudeta DD

LAMBDR: Long-range amplification and Nanopore sequencing of the Mycobacterium bovis direct-repeat region . A novel method for in-silico spoligotyping of M. bovis directly from badger faeces

LAMBDR：牛分枝杆菌直接重复区域的长程扩增和纳米孔测序。

• DOI: 10.1101/791129
• 发表时间: 2019
• 作者: James R

Evaluation of a Fecal Shedding Test To Detect Badger Social Groups Infected with Mycobacterium bovis.

• DOI: 10.1128/jcm.01226-20
• 发表时间: 2020-12-17
• 期刊: Journal of clinical microbiology
• 影响因子: 9.4
• 作者: Murphy ARJ;Travis ER;Hibberd V;Porter D;Wellington EMH
• 通讯作者: Wellington EMH

Environmental reservoirs of pathogenic mycobacteria across the Ethiopian biogeographical landscape.

• DOI: 10.1371/journal.pone.0173811
• 发表时间: 2017
• 期刊: PloS one
• 影响因子: 3.7
• 作者: King HC;Khera-Butler T;James P;Oakley BB;Erenso G;Aseffa A;Knight R;Wellington EM;Courtenay O
• 通讯作者: Courtenay O