Disrupting DNA G-quadruplex secondary structures to revert premature ageing

破坏 DNA G 四链体二级结构以逆转过早衰老

• 批准号: BB/R011605/1
• 负责人: Marco Di Antonio
• 金额: $ 130.2万
• 依托单位: Imperial College London
• 依托单位国家: 英国
• 项目类别: Fellowship
• 财政年份: 2018
• 资助国家: 英国
• 起止时间: 2018 至 无数据
• 项目状态: 未结题
• 来源: https://gtr.ukri.org/projects?ref=BB%2FR011605%2F1
• 关键词: Disrupting; DNA; quadruplex; secondary; structures

The underlying cause of aging remains one of the central mysteries of biology. Recent studies in several different biological models suggest that not only can the rate of aging be modified by environmental and genetic factors, but also that the aging clock can be reversed, restoring characteristics of youthfulness to aged cells and tissues.DNA packaging and organisation in the cell nucleus has been shown to be significantly altered thorough ageing and some accelerating ageing disorders. Treatment with small molecule ligands can interfere with nuclear organisation and revert premature ageing sings in patient-derived cells. DNA non-canonical structures, in particular DNA G-quadruplex structures, have also shown to play a role in DNA packaging in some accelerating ageing syndromes. Indeed, mutation of specific G-quadruplex unwinding proteins and accumulation of these DNA structures have been shown to be the underlying cause of accelerating ageing syndromes, such as Cockayne syndromes. Targeting DNA and its structural feature to both further our understating in fundamental ageing biology and explore potential for therapeutic intervention of rare accelerating ageing disorders, is an unexplored opportunity that needs to be investigated.Here, I will exploit a range of chemical biology tools to both investigate the fundamental role of DNA G-quadruplex structures in ageing biology, and explore the potential for therapeutic intervention of rare accelerating ageing syndromes by developing small molecules to target and disrupt these structures. Specifically, I will combine my experience with DNA G-quadruplex targeting and genome-wide mapping with a G-quadruplex selective live-cell imaging methodology that has been developed at the chemistry department of Imperial College London in collaboration with Dr. Vilar. I intend to address these specific questions:1) What are the global changes in G-quadruplex prevalence genome-wide in accelerating ageing disorders and how is DNA packaging affected by their formation? 2) Can targeting and disrupting the G-quadruplexes that accumulate via ageing be used to revert the ageing phenotypes by restoring correct DNA packaging?3) What are the dynamics in living cells, with respect to transcription and replication of DNA, that cause G-quadruplex formation thorough ageing?Addressing these questions will further our understanding of the cause and effect relationship between DNA secondary structure formation and gene mis-regulation that cause ageing. This will pave the way towards the development of novel therapeutic agents which will ultimately increase health-span and treat rare accelerating ageing syndromes.

衰老的根本原因仍然是生物学的核心谜团之一。最近在几种不同的生物模型中进行的研究表明，不仅衰老的速度可以通过环境和遗传因素来改变，而且衰老的时钟也可以逆转，使衰老的细胞和组织恢复年轻的特征。细胞核中的DNA包装和组织已被证明在衰老和一些加速衰老的疾病中发生显着改变。用小分子配体治疗可以干扰细胞核组织并逆转患者来源的细胞中的过早老化。DNA非规范结构，特别是DNA G-四链体结构，也显示在一些加速老化综合征中的DNA包装中发挥作用。事实上，特定G-四链体解旋蛋白的突变和这些DNA结构的积累已被证明是加速衰老综合征（如Cockayne综合征）的根本原因。针对DNA及其结构特征，以进一步加深我们对基本衰老生物学的理解，并探索罕见加速衰老疾病的治疗干预潜力，是一个尚未探索的机会，需要调查。在这里，我将利用一系列化学生物学工具来调查DNA G-四链体结构在衰老生物学中的基本作用，并探索通过开发小分子靶向和破坏这些结构来治疗罕见加速衰老综合征的潜力。具体来说，我将联合收割机结合我的经验与DNA G-四链体靶向和全基因组定位与G-四链体选择性活细胞成像方法，已开发的化学系的帝国理工学院伦敦与博士合作。我打算解决这些具体问题：1）在加速衰老疾病中，全基因组G-四链体流行率的全球变化是什么？DNA包装如何受到它们形成的影响？2)靶向和破坏通过衰老积累的G-四链体可以通过恢复正确的DNA包装来逆转衰老表型吗？3)关于DNA的转录和复制，在活细胞中是什么动力导致G-四链体在衰老过程中形成？解决这些问题将进一步加深我们对DNA二级结构形成和导致衰老的基因失调之间因果关系的理解。这将为开发新型治疗药物铺平道路，最终将增加健康寿命并治疗罕见的加速老化综合征。

项目成果

Cation-responsive and photocleavable hydrogels from non-canonical amphiphilic DNA nanostructures

来自非典型两亲性 DNA 纳米结构的阳离子响应和光裂解水凝胶

• DOI: 10.26434/chemrxiv-2021-kxwg0-v2
• 发表时间: 2021
• 作者: Fabrini G

The unexplored potential of quinone methides in chemical biology.

• DOI: 10.1016/j.bmc.2019.04.001
• 发表时间: 2019-06
• 期刊: Bioorganic & medicinal chemistry
• 影响因子: 3.5
• 作者: Aisling Minard;Denise Liano;Xiaofan Wang;M. Di Antonio

Single-molecule visualization of DNA G-quadruplex formation in live cells.

• DOI: 10.1038/s41557-020-0506-4
• 发表时间: 2020-09
• 期刊: Nature chemistry
• 影响因子: 21.8
• 作者: Di Antonio M;Ponjavic A;Radzevičius A;Ranasinghe RT;Catalano M;Zhang X;Shen J;Needham LM;Lee SF;Klenerman D;Balasubramanian S
• 通讯作者: Balasubramanian S

Cation-Responsive and Photocleavable Hydrogels from Noncanonical Amphiphilic DNA Nanostructures.

• DOI: 10.1021/acs.nanolett.1c03314
• 发表时间: 2022-01-26
• 期刊: Nano letters
• 影响因子: 10.8
• 作者: Fabrini G;Minard A;Brady RA;Di Antonio M;Di Michele L
• 通讯作者: Di Michele L

Long-range DNA interactions: inter-molecular G-quadruplexes and their potential biological relevance.

• DOI: 10.1039/d2cc04872h
• 发表时间: 2022-11-17
• 期刊: CHEMICAL COMMUNICATIONS
• 影响因子: 4.9
• 作者: Liano, Denise;Monti, Ludovica;Chowdhury, Souroprobho;Raguseo, Federica;Di Antonio, Marco
• 通讯作者: Di Antonio, Marco