Physics of Bacterial Growth Control and Antibiotic Resistance

细菌生长控制和抗生素耐药性的物理学

• 批准号: EP/R029822/1
• 负责人: Shiladitya Banerjee
• 金额: $ 27.56万
• 依托单位: University College London
• 依托单位国家: 英国
• 项目类别: Research Grant
• 财政年份: 2018
• 资助国家: 英国
• 起止时间: 2018 至 无数据
• 项目状态: 已结题
• 来源: https://gtr.ukri.org/projects?ref=EP%2FR029822%2F1
• 关键词: Physics; Bacterial; Growth; Control; Antibiotic

Living systems operate far from equilibrium, constantly consuming and dissipating energy to perform their defining functions of growth, replication, and adaptation to diverse environmental conditions. While the physical principles governing the dynamics of non-equilibrium systems have emerged over the past two decades, how these principles are realised for the regulation of vital biological processes remains poorly understood. The goal of the proposed research is to develop an in-depth physical understanding of the regulatory mechanisms controlling bacterial growth, shape development, and adaptive response to antibiotics. Bacterial growth and shapes are determined by the cell wall, a rigid protein-based structure that can withstand high amounts of osmotic pressure while driving cell elongation. An outstanding challenge is to relate alterations in physical properties of the cell wall to adaptive shape changes and fitness control in bacteria. This is important for understanding how bacteria can recover their fitness for growth and division under antibiotic treatment that inhibit the cell wall growth machinery. We seek to address this challenge by proposing a novel framework in which theoretical modelling and experimental data are integrated to dissect how protein synthesis and stochastic cell cycle processes control robust growth and adaptive behaviour in single bacterial cells.Using tools from statistical mechanics and soft matter physics, we will develop a quantitative model for growing cell wall structures that is coupled to stochastic decision-making processes for cell size and division control. We will extend this model to dissect how single bacterial cells harness the feedback between mechanical forces and biochemical reactions to adapt to growth inhibitory stresses. In particular, we will dissect the mechanisms of fitness recovery in rod-shaped bacterium under ribosome-targeting antibiotics that constitute a major class of clinically used antibacterial drugs. We will compare the theoretical model predictions against high-throughput experimental measurements of single bacterial shape and growth in normal and antibiotic-treated conditions. This integrated approach will allow us to determine the physical principles relating the speed and the accuracy of antibiotic adaptation to the energy consumption budget of a cell. The outcome of this research will fundamentally advance our understanding of non-equilibrium physics of living systems by establishing a cost-performance tradeoff relation in adaptive biophysical processes. Furthermore we will directly address the physical impacts of antibacterial drugs on bacterial fitness at the single-cell level, which will have wide ranging implications for the development and design of new drugs that can effectively control the evolution of antibiotic resistance.

生命系统的运行远离平衡，不断消耗和耗散能量，以执行其生长，复制和适应不同环境条件的定义功能。虽然在过去的二十年中出现了控制非平衡系统动力学的物理原理，但这些原理如何实现对重要生物过程的调节仍然知之甚少。拟议研究的目标是对控制细菌生长，形状发育和对抗生素的适应性反应的调节机制进行深入的物理理解。细菌的生长和形状是由细胞壁决定的，细胞壁是一种刚性的蛋白质结构，可以承受高渗透压，同时驱动细胞伸长。一个突出的挑战是将细胞壁的物理性质的改变与细菌的适应性形状变化和适应性控制联系起来。这对于理解细菌如何在抑制细胞壁生长机制的抗生素治疗下恢复其生长和分裂的适应性非常重要。我们试图通过提出一个新的框架来解决这一挑战，在这个框架中，理论建模和实验数据被整合，以剖析蛋白质合成和随机细胞周期过程如何控制单个细菌细胞的稳健生长和自适应行为。我们将发展一个生长细胞壁结构的定量模型，该模型与细胞大小和分裂控制的随机决策过程相结合。我们将扩展这个模型来剖析单个细菌细胞如何利用机械力和生化反应之间的反馈来适应生长抑制压力。特别是，我们将解剖的健身恢复在杆状细菌的核糖体靶向抗生素，构成了一个主要类别的临床使用的抗菌药物的机制。我们将比较理论模型的预测对高通量的实验测量单个细菌的形状和生长在正常和驱虫处理的条件。这种综合方法将使我们能够确定与抗生素适应的速度和准确性相关的物理原理，以确定细胞的能量消耗预算。这项研究的成果将从根本上推进我们的理解，非平衡物理的生命系统，建立一个成本效益权衡关系，在适应性生物物理过程。此外，我们将直接解决抗菌药物在单细胞水平上对细菌适应性的物理影响，这将对开发和设计能够有效控制抗生素耐药性演变的新药产生广泛的影响。

项目成果

Cellular resource allocation strategies for cell size and shape control in bacteria.

• DOI: 10.1111/febs.16234
• 发表时间: 2022-12
• 期刊: The FEBS journal

Nutrient-Dependent Trade-Offs between Ribosomes and Division Protein Synthesis Control Bacterial Cell Size and Growth.

• DOI: 10.1016/j.celrep.2020.108183
• 发表时间: 2020-09
• 期刊: Cell reports
• 影响因子: 8.8
• 作者: D. Serbanescu;Nikola Ojkic;Shiladitya Banerjee

Universal surface-to-volume scaling and aspect ratio homeostasis in rod-shaped bacteria

• DOI: 10.1101/583989
• 发表时间: 2019-03
• 期刊: bioRxiv
• 作者: Nikola Ojkic;D. Serbanescu;Shiladitya Banerjee

Mechanical feedback promotes bacterial adaptation to antibiotics

• DOI: 10.1038/s41567-020-01079-x
• 发表时间: 2021-01-04
• 期刊: NATURE PHYSICS
• 影响因子: 19.6
• 作者: Banerjee, Shiladitya;Lo, Klevin;Dinner, Aaron R.
• 通讯作者: Dinner, Aaron R.

Bacterial cell shape control by nutrient-dependent synthesis of cell division inhibitors

• DOI: 10.1016/j.bpj.2021.04.001
• 发表时间: 2021-06-01
• 期刊: BIOPHYSICAL JOURNAL
• 影响因子: 3.4
• 作者: Ojkic, Nikola;Banerjee, Shiladitya
• 通讯作者: Banerjee, Shiladitya