A Coordinated Infrastructure for NMR for the Physical and Life Sciences: Upgrade to the Ultra-high Field 950 MHz Spectrometer at Oxford

物理和生命科学领域的协调核磁共振基础设施：升级至牛津的超高场 950 MHz 光谱仪

• 批准号: EP/R029849/1
• 负责人: Christina Redfield
• 金额: $ 60.83万
• 依托单位: University of Oxford
• 依托单位国家: 英国
• 项目类别: Research Grant
• 财政年份: 2018
• 资助国家: 英国
• 起止时间: 2018 至 无数据
• 项目状态: 已结题
• 来源: https://gtr.ukri.org/projects?ref=EP%2FR029849%2F1
• 关键词: Coordinated; Infrastructure; NMR; Physical; Life

Uncovering the dynamics and three-dimensional arrangements of the millions of biological macromolecules in a cell remains a formidable task. Yet we need to know how these molecules assemble and interact if we are to understand the emergent property called life. Although large-scale efforts, such as the human genome project, have provided us with the sets of components that make up living organisms, we are still some way from comprehending how these components come together to form the molecular machines that carry out all the basic biological functions. Similar to engineers, we need to "see" the shape of components to understand their role and place in functional assemblies. Nuclear Magnetic Resonance (NMR) spectroscopy is currently the only method that can provide us with detailed views of biological components under conditions similar to those that occur in living organisms, or even in the living cell itself. As such, NMR studies complement other structural methods which rely on creating immobilised assemblies, such as crystallography and electron microscopy. As well as structural information NMR gives unique information about the dynamic behavior of these components over time, which can be related to events such as chemical catalysis, and insight about associations occurring between components that complements information from other biophysical methods.NMR instrumentation consists of large, powerful, and very expensive magnets, and electronics that transmit and record experimental signals. In this proposal, the University of Oxford requests support from the UK Research Councils to upgrade our existing ultra-high field 950 MHz NMR system, which features the most powerful magnet in the UK, with the latest generation of high-sensitivity electronics for signal detection. This so-called "cryoprobe" upgrade will boost the measured signal by a factor of ~2-4 enhancing the quality of experimental data collected and enabling more challenging molecular systems to be studied. Coupled to an automation accessory that will allow round-the-clock use of the upgraded NMR system, our proposal represents the most cost-effective and efficient means of increasing cutting-edge NMR capacity and capability in the UK (~£535K for the proposed upgrade versus ~£5M for a similar new system).Once upgraded, 50% of the time on the 950 MHz NMR system will be made available to external users from other UK academic institutions and from industry. In particular, we aim to assist users from the south of England and Wales, for which Oxford is well placed to serve as an easily accessible regional NMR hub.

揭示细胞中数百万个生物大分子的动力学和三维排列仍然是一项艰巨的任务。然而，如果我们想要理解这种称为生命的新兴属性，我们需要知道这些分子是如何组装和相互作用的。尽管大规模的努力，比如人类基因组计划，已经为我们提供了一系列组成活的有机体的组件，但我们仍然离理解这些组件如何聚集在一起形成执行所有基本生物功能的分子机器还有一段路要走。与工程师类似，我们需要“看到”组件的形状，以了解它们在功能装配中的角色和位置。核磁共振波谱是目前唯一一种可以在类似于活生物体甚至活细胞本身的条件下为我们提供生物成分详细信息的方法。因此，核磁共振研究补充了其他依赖于创建固定组装的结构方法，如结晶学和电子显微镜。除了结构信息，核磁共振还提供了关于这些组件随时间的动态行为的独特信息，这些信息可能与化学催化等事件有关，并提供了对组件之间发生的关联的洞察，这些关联补充了来自其他生物物理方法的信息。核磁共振仪器由巨大、强大且非常昂贵的磁铁以及传输和记录实验信号的电子设备组成。在这项提案中，牛津大学请求英国研究委员会支持升级我们现有的超高场950 MHz核磁共振系统，该系统具有英国最强大的磁铁，配备了用于信号检测的最新一代高灵敏度电子设备。这种所谓的“低温探头”升级将使测量信号提高2-4倍，提高收集的实验数据的质量，并使更具挑战性的分子系统能够被研究。再加上一个自动化附件，将允许全天候使用升级的核磁共振系统，我们的建议代表了增加英国尖端核磁共振容量和能力的最具成本效益和效率的方法(拟议的升级为~GB 535K，而类似的新系统为~5M)。一旦升级，950 MHz核磁共振系统上50%的时间将向来自英国其他学术机构和行业的外部用户提供。特别是，我们的目标是帮助来自英格兰南部和威尔士的用户，牛津处于有利地位，可以作为一个方便访问的地区性核磁共振中心。

项目成果

A COVID Moonshot: assessment of ligand binding to the SARS-CoV-2 main protease by saturation transfer difference NMR spectroscopy

COVID Moonshot：通过饱和转移差核磁共振波谱评估配体与 SARS-CoV-2 主要蛋白酶的结合

• DOI: 10.1101/2020.06.17.156679
• 发表时间: 2020
• 作者: Kantsadi A

Haptenic adducts of ß-lactam antibiotics elicit antibody responses with narrow clonality and specificity

β-内酰胺抗生素的半抗原加合物引发具有窄克隆性和特异性的抗体反应

• DOI: 10.1101/2023.11.02.565155
• 发表时间: 2023
• 作者: Deimel L

NMR study of the structure and dynamics of the BRCT domain from the kinetochore protein KKT4.

对动粒蛋白 KKT4 的 BRCT 结构域的结构和动力学进行 NMR 研究。

• DOI: 10.1007/s12104-024-10163-9
• 发表时间: 2024
• 期刊: Biomolecular NMR assignments
• 影响因子: 0.9
• 作者: Ludzia P

Ion binding with charge inversion combined with screening modulates DEAD box helicase phase transitions.

离子结合与电荷反转结合筛选调节 DEAD 盒解旋酶相变。

• DOI: 10.1016/j.celrep.2023.113375
• 发表时间: 2023
• 期刊: Cell reports
• 影响因子: 8.8
• 作者: Crabtree MD

A COVID moonshot: assessment of ligand binding to the SARS-CoV-2 main protease by saturation transfer difference NMR spectroscopy.

• DOI: 10.1007/s10858-021-00365-x
• 发表时间: 2021-05
• 期刊: Journal of biomolecular NMR
• 影响因子: 2.7
• 作者: Kantsadi AL;Cattermole E;Matsoukas MT;Spyroulias GA;Vakonakis I
• 通讯作者: Vakonakis I