Development and application of eDNA tools to assess the structure and function of coastal sea ecosystems (MARINe-DNA)

评估沿海海洋生态系统结构和功能的eDNA工具的开发和应用(MARINe-DNA)

基本信息

项目摘要

This NERC highlight topic focuses on the use of eDNA as a new tool for 21st century ecology. Environmental DNA (eDNA) is defined in the call as 'free DNA present outside of any organism'. The aim of the call is to address the current knowledge gaps in the application of eDNA approaches to help understand community biodiversity and dynamics of ecosystem functioning. We will conduct a proof-of-concept investigation at Station L4, an exemplar coastal ocean ecosystem, and natural laboratory, in the English Channel off Plymouth, UK. Starting with a hydrodynamic model to spatially and temporally define the ecosystem (how large is the natural laboratory?) the project will then be split into three experimental phases: 1) eDNA methodological validation (developing the tools);2) 18-month temporal pelagic survey (testing the tools); and3) Comprehensive data analysis and model assimilation (did the tools work, what did they tell us, and are they useful?)Using a wide range of expertise from 4 different institutions (PML, MBA, NOC, and U.Exeter), we will investigate a spatially defined region, from estuarine to coastal, benthic to pelagic; and at a range of temporal resolutions building on NERC National Capability sampling regimes and biosensor deployment. E-metagenetic and e-metagenomic data (individual genes to whole genomes) will be used to answer cross-cutting science questions utilising current physicochemical and biological information collected in parallel at this important coastal site. Results from this project will provide a methodological template for the use of eDNA and remote eDNA biosensors in aquatic ecosystems. Downstream data will significantly advance our understanding of persistence of eDNA, and its potential impact on informing models of ecosystem functioning. Products of this research will have wider implications for the use of this tool on fisheries assessments, fish pathogen detection, conservation biology, environmental risk management (e.g. toxic algae blooms, human pathogens, ballast water regulations), with the wider aim of supporting biodiversity and nature's services through NERC's strategic pillar of "Managing environmental change".
这个NERC突出主题的重点是使用eDNA作为一个新的工具,为21世纪的世纪生态。环境DNA(eDNA)是“存在于任何生物体外部的游离DNA”。该呼吁的目的是解决目前在应用eDNA方法方面的知识差距,以帮助了解社区生物多样性和生态系统功能的动态。我们将在L4站进行概念验证调查,这是一个典型的沿海海洋生态系统和自然实验室,位于英国普利茅斯附近的英吉利海峡。从流体动力学模型开始,在空间和时间上定义生态系统(天然实验室有多大?)然后,该项目将分为三个实验阶段:1)eDNA方法验证(开发工具);2)18个月的时间远洋调查(测试工具);和3)全面的数据分析和模型同化(工具是否有效,它们告诉我们什么,它们有用吗?)我们将利用来自4个不同机构(PML、MBA、NOC和U.埃克塞特)的广泛专业知识,调查空间定义的区域,从河口到沿海,从海底到远洋;并以一系列时间分辨率建立在NERC国家能力采样制度和生物传感器部署的基础上。E-metagenetic和e-metagenomic数据(单个基因到整个基因组)将用于回答交叉科学问题,利用在这个重要的沿海站点并行收集的当前物理化学和生物学信息。该项目的结果将为在水生生态系统中使用eDNA和远程eDNA生物传感器提供方法模板。下游数据将大大推进我们对eDNA持久性的理解,以及它对生态系统功能模型的潜在影响。这项研究的产品将对渔业评估,鱼类病原体检测,保护生物学,环境风险管理(例如有毒藻类水华,人类病原体,压载水法规)的工具的使用产生更广泛的影响,更广泛的目标是通过NERC的战略支柱“管理环境变化”来支持生物多样性和自然服务。

项目成果

期刊论文数量(10)
专著数量(0)
科研奖励数量(0)
会议论文数量(0)
专利数量(0)
Influence of short and long term processes on SAR11 communities in open ocean and coastal systems.
  • DOI:
    10.1038/s43705-022-00198-1
  • 发表时间:
    2022-11-19
  • 期刊:
  • 影响因子:
    0
  • 作者:
    Bolanos, Luis M.;Tait, Karen;Somerfield, Paul J.;Parsons, Rachel J.;Giovannoni, Stephen J.;Smyth, Timothy;Temperton, Ben
  • 通讯作者:
    Temperton, Ben
Cryptic bacterial pathogens of diatoms peak during senescence of a winter diatom bloom.
硅藻的隐性细菌病原体在冬季硅藻花的衰老过程中达到顶峰。
  • DOI:
    10.1111/nph.19441
  • 发表时间:
    2023
  • 期刊:
  • 影响因子:
    0
  • 作者:
    Branscombe L
  • 通讯作者:
    Branscombe L
Sequence locally, think globally: The Darwin Tree of Life Project.
本地排序,全球思考:达尔文生命之树项目。
The genome sequence of the grey top shell, Steromphala cineraria (Linnaeus, 1758)
灰顶壳 Steromphala cineraria 的基因组序列(Linnaeus,1758)
  • DOI:
    10.12688/wellcomeopenres.17677.1
  • 发表时间:
    2022
  • 期刊:
  • 影响因子:
    0
  • 作者:
    Adkins P
  • 通讯作者:
    Adkins P
Testing Bergmann's rule in marine copepods
  • DOI:
    10.1111/ecog.05545
  • 发表时间:
    2021-08-10
  • 期刊:
  • 影响因子:
    5.9
  • 作者:
    Campbell, Max D.;Schoeman, David S.;Richardson, Anthony J.
  • 通讯作者:
    Richardson, Anthony J.
{{ item.title }}
{{ item.translation_title }}
  • DOI:
    {{ item.doi }}
  • 发表时间:
    {{ item.publish_year }}
  • 期刊:
  • 影响因子:
    {{ item.factor }}
  • 作者:
    {{ item.authors }}
  • 通讯作者:
    {{ item.author }}

数据更新时间:{{ journalArticles.updateTime }}

{{ item.title }}
  • 作者:
    {{ item.author }}

数据更新时间:{{ monograph.updateTime }}

{{ item.title }}
  • 作者:
    {{ item.author }}

数据更新时间:{{ sciAawards.updateTime }}

{{ item.title }}
  • 作者:
    {{ item.author }}

数据更新时间:{{ conferencePapers.updateTime }}

{{ item.title }}
  • 作者:
    {{ item.author }}

数据更新时间:{{ patent.updateTime }}

William Wilson其他文献

Developing a Flow Cytometric Signature of Carfilzomib Responsiveness in Myeloma
  • DOI:
    10.1182/blood-2022-169882
  • 发表时间:
    2022-11-15
  • 期刊:
  • 影响因子:
  • 作者:
    Ieuan Walker;Venetia D'arcy;Antonio Rodriguez Romera;Georgina Anderson;Anna Aubareda;James Roy;Garima Khandelwal;William Wilson;Evelyn Fitzsimons;Daria Galas-Filipowicz;Kane Foster;Rakesh Popat;Karthik Ramasamy;Matthew Streetly;Ceri Bygrave;Reuben Benjamin;Ruth M. de Tute;Marquita Camilleri;Selina J Chavda;Gavin Pang
  • 通讯作者:
    Gavin Pang
Ten Years of Percutaneous Pulmonary Valve Implantation in Australia and New Zealand
  • DOI:
    10.1016/j.hlc.2022.07.008
  • 发表时间:
    2022-12-01
  • 期刊:
  • 影响因子:
  • 作者:
    Claire M. Lawley;David Tanous;Clare O’Donnell;Benjamin Anderson;Nicholas Aroney;Darren L. Walters;Stephen Shipton;William Wilson;David S. Celermajer;Philip Roberts
  • 通讯作者:
    Philip Roberts
Hedging strategy for ethanol processing with copula distributions
  • DOI:
    10.1016/j.eneco.2016.04.011
  • 发表时间:
    2016-06-01
  • 期刊:
  • 影响因子:
  • 作者:
    Iddrisu Awudu;William Wilson;Bruce Dahl
  • 通讯作者:
    Bruce Dahl
P-061 Spinal involvement predicts for inferior overall survival (OS), progression free survival (PFS) and higher skeletal related events risk in multiple myeloma (MM) patients: a single center experience
  • DOI:
    10.1016/s2152-2650(23)01679-8
  • 发表时间:
    2023-09-01
  • 期刊:
  • 影响因子:
  • 作者:
    Nikolaos Kanellias;Agapi Parcharidou;Kate Xu;William Wilson;Rodothea Americanou;Adam Benton;Sean Molloy;Jan Herzog;Rikin Hargunani;Rakesh Popat;Jonathan Sive;Lydia Lee;Annabel McMillan;Xenofon Papanikolaou;Neil Rabin;Kwee Yong;Charalampia Kyriakou
  • 通讯作者:
    Charalampia Kyriakou
OUTCOMES FOLLOWING TRANSCATHETER PULMONARY VALVE REPLACEMENT: RESULTS FROM A QUATERNARY AUSTRALIAN CENTRE
  • DOI:
    10.1016/s0735-1097(24)03625-8
  • 发表时间:
    2024-04-02
  • 期刊:
  • 影响因子:
  • 作者:
    Malanka Lankaputhra;Melissa GY Lee;Anoop Ninan Koshy;Claire Purio;Leeanne Grigg;William Wilson
  • 通讯作者:
    William Wilson

William Wilson的其他文献

{{ item.title }}
{{ item.translation_title }}
  • DOI:
    {{ item.doi }}
  • 发表时间:
    {{ item.publish_year }}
  • 期刊:
  • 影响因子:
    {{ item.factor }}
  • 作者:
    {{ item.authors }}
  • 通讯作者:
    {{ item.author }}

{{ truncateString('William Wilson', 18)}}的其他基金

Open Access Block Award 2024 - Marine Biological Association
2024 年开放获取区块奖 - 海洋生物学协会
  • 批准号:
    EP/Z532538/1
  • 财政年份:
    2024
  • 资助金额:
    $ 38.1万
  • 项目类别:
    Research Grant
Open Access Block Award 2023 - Marine Biological Association
2023 年开放获取区块奖 - 海洋生物学协会
  • 批准号:
    EP/Y530116/1
  • 财政年份:
    2023
  • 资助金额:
    $ 38.1万
  • 项目类别:
    Research Grant
Quantum Noir: A conference series focused on Faculty, Researchers, and Students of Color(+) in the Quantum Sciences
量子黑色:关注量子科学领域有色人种的教师、研究人员和学生的系列会议
  • 批准号:
    2306216
  • 财政年份:
    2023
  • 资助金额:
    $ 38.1万
  • 项目类别:
    Standard Grant
MRI:Acquisition of Ocean Gliders for Marine Science Research Support at the University of the Virgin Islands
MRI:采购海洋滑翔机以支持维尔京群岛大学的海洋科学研究
  • 批准号:
    2216150
  • 财政年份:
    2022
  • 资助金额:
    $ 38.1万
  • 项目类别:
    Standard Grant
Open Access Block Award 2022 - Marine Biological Association
2022 年开放获取块奖 - 海洋生物学协会
  • 批准号:
    EP/X527415/1
  • 财政年份:
    2022
  • 资助金额:
    $ 38.1万
  • 项目类别:
    Research Grant
Doctoral Dissertation Research: Employment of Native Americans with Criminal Records
博士论文研究:有犯罪记录的美洲原住民的就业
  • 批准号:
    1802576
  • 财政年份:
    2018
  • 资助金额:
    $ 38.1万
  • 项目类别:
    Standard Grant
Role of Latent Virus Infection in Marine Phytoplankton
潜伏病毒感染在海洋浮游植物中的作用
  • 批准号:
    0851255
  • 财政年份:
    2009
  • 资助金额:
    $ 38.1万
  • 项目类别:
    Standard Grant
Doctoral Dissertation Research: Native and Non-Native Group Interactions
博士论文研究:本土和非本土群体互动
  • 批准号:
    0927042
  • 财政年份:
    2009
  • 资助金额:
    $ 38.1万
  • 项目类别:
    Standard Grant
Collaborative Research: Decoding Virus Leviathans
合作研究:解码病毒利维坦
  • 批准号:
    0949162
  • 财政年份:
    2009
  • 资助金额:
    $ 38.1万
  • 项目类别:
    Standard Grant
Functional genomics of phosphate acquisition during virus infection of Emiliania huxleyi.
艾米利亚赫胥黎病毒感染期间磷酸盐获取的功能基因组学。
  • 批准号:
    0723730
  • 财政年份:
    2008
  • 资助金额:
    $ 38.1万
  • 项目类别:
    Standard Grant

相似国自然基金

Graphon mean field games with partial observation and application to failure detection in distributed systems
  • 批准号:
  • 批准年份:
    2025
  • 资助金额:
    0.0 万元
  • 项目类别:
    省市级项目
均相液相生物芯片检测系统的构建及其在癌症早期诊断上的应用
  • 批准号:
    82372089
  • 批准年份:
    2023
  • 资助金额:
    48.00 万元
  • 项目类别:
    面上项目
用于小尺寸管道高分辨成像荧光聚合物点的构建、成像机制及应用研究
  • 批准号:
    82372015
  • 批准年份:
    2023
  • 资助金额:
    48.00 万元
  • 项目类别:
    面上项目
网格中以情境为中心的应用自动化研究
  • 批准号:
    60703054
  • 批准年份:
    2007
  • 资助金额:
    21.0 万元
  • 项目类别:
    青年科学基金项目

相似海外基金

Renewal application: How do ecological trade-offs drive ectomycorrhizal fungal community assembly? Fine- scale processes with large-scale implications
更新应用:生态权衡如何驱动外生菌根真菌群落组装?
  • 批准号:
    MR/Y011503/1
  • 财政年份:
    2025
  • 资助金额:
    $ 38.1万
  • 项目类别:
    Fellowship
RII Track-4: NSF: Developing 3D Models of Live-Endothelial Cell Dynamics with Application Appropriate Validation
RII Track-4:NSF:开发活内皮细胞动力学的 3D 模型并进行适当的应用验证
  • 批准号:
    2327466
  • 财政年份:
    2024
  • 资助金额:
    $ 38.1万
  • 项目类别:
    Standard Grant
Conference: PDE in Moab: Advances in Theory and Application
会议:摩押偏微分方程:理论与应用的进展
  • 批准号:
    2350128
  • 财政年份:
    2024
  • 资助金额:
    $ 38.1万
  • 项目类别:
    Standard Grant
Collaborative Research: Uncovering the adaptive origins of fossil apes through the application of a transdisciplinary approach
合作研究:通过应用跨学科方法揭示类人猿化石的适应性起源
  • 批准号:
    2316612
  • 财政年份:
    2024
  • 资助金额:
    $ 38.1万
  • 项目类别:
    Standard Grant
Collaborative Research: Uncovering the adaptive origins of fossil apes through the application of a transdisciplinary approach
合作研究:通过应用跨学科方法揭示类人猿化石的适应性起源
  • 批准号:
    2316615
  • 财政年份:
    2024
  • 资助金额:
    $ 38.1万
  • 项目类别:
    Standard Grant
GOALI: Understanding granulation using microbial resource management for the broader application of granular technology
目标:利用微生物资源管理了解颗粒化,以实现颗粒技术的更广泛应用
  • 批准号:
    2227366
  • 财政年份:
    2024
  • 资助金额:
    $ 38.1万
  • 项目类别:
    Standard Grant
IgA and IgM superiority over IgG in neutralizing SARS-CoV-2: Clarifying the mechanisms and application
IgA 和 IgM 在中和 SARS-CoV-2 方面优于 IgG:阐明机制和应用
  • 批准号:
    24K18274
  • 财政年份:
    2024
  • 资助金额:
    $ 38.1万
  • 项目类别:
    Grant-in-Aid for Early-Career Scientists
Sustainable solution for cooling application
冷却应用的可持续解决方案
  • 批准号:
    10089491
  • 财政年份:
    2024
  • 资助金额:
    $ 38.1万
  • 项目类别:
    Collaborative R&D
Measurement, analysis and application of advanced lubricant materials
先进润滑材料的测量、分析与应用
  • 批准号:
    10089539
  • 财政年份:
    2024
  • 资助金额:
    $ 38.1万
  • 项目类别:
    Collaborative R&D
Application of artificial intelligence to predict biologic systemic therapy clinical response, effectiveness and adverse events in psoriasis
应用人工智能预测生物系统治疗银屑病的临床反应、有效性和不良事件
  • 批准号:
    MR/Y009657/1
  • 财政年份:
    2024
  • 资助金额:
    $ 38.1万
  • 项目类别:
    Fellowship
{{ showInfoDetail.title }}

作者:{{ showInfoDetail.author }}

知道了