EXOCYCLIC DNA ADDUCTS--SYNTHETIC AND ANALYTIC STUDIES

外环 DNA 加合物——合成和分析研究

• 批准号: 6416841
• 负责人: FRANCIS JOHNSON
• 金额: $ 11.52万
• 依托单位: STATE UNIVERSITY NEW YORK STONY BROOK
• 依托单位国家: 美国
• 财政年份: 2001
• 资助国家: 美国
• 起止时间: 2001-02-01 至 2002-01-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/6416841
• 关键词: DNA damage; DNA repair; acrolein; adduct; analytical chemistry; carmustine; crosslink; deoxyadenosines; enzyme mechanism; glycosylation; lipid peroxides; nucleic acid chemical synthesis; nucleoside analog; nucleosides; oligonucleotides; protective chemical group; synthetic nucleic acid; synthetic nucleotide; vinyledene chloride

DESCRIPTION: (Applicant's Description) The organic, synthetic, and analytical chemistry described in this section of the program is designed to support biological and physico-chemical studies in the accompanying projects. The primary goal is to provide modified 2'-deoxynucleosides derivatized in the form of their DMT-phosphoramidites (N-protected where necessary) for synthetic DNA oligomers. The modified nucleosides comprise three groups: (a) those that represent or mimic damage induced in DNA by electrophiles or by reactive oxidizing species, (b) those that are non-hydrolysable mimics of the normal natural substrates for studies of DNA repair enzymes, and those that after activation will form exocyclic adducts or inter-strand crosslinks. Two main themes dominate the synthetic chemistry. The first involves having a vicinal glycol in a nucleoside side-chain that by periodate oxidation can be converted to an aldehyde. The latter will generate the desired adducted base, post-synthetically. Adducts related to araldehyde, crotonaldehyde, lipid peroxidation adducts, the natural abasic site, and ribonolactone will be synthesized in situ by this method. Cross-links also will be generated by this approach. The second theme concerns the use of "carba" purines and pyrimidines as stable or non-hydrolysable mimics of both normal bases and oxidized or adducted forms of endogenous DNA damage. These will be used: (a) in studies involving mechanisms by which DNA repair enzymes such as MutY operate, including the eversion (flip-out) process, (b) for studies of mutagenic mechanisms, and (c) to obtain crystal structures of complexes with DNA repair enzymes.

描述：(申请人描述)本课程中描述的有机化学、合成化学和分析化学是为了支持相关项目中的生物和物理化学研究。其主要目标是为合成DNA低聚物提供以其DMT-亚磷酰胺(必要时N-保护)形式衍生的修饰的2‘-脱氧核苷。经修饰的核苷包括三个基团：(A)代表或模拟由亲电体或活性氧化物种引起的DNA损伤的核苷；(B)用于研究DNA修复酶的正常天然底物的不可水解性模拟物；以及活化后将形成环外加合物或链间交联物的核苷。两个主要主题主导了合成化学。第一种方法是在核苷侧链上含有邻位乙二醇，通过高碘酸氧化可以将其转化为醛。后者将在合成后生成所需的加成碱。用这种方法可以原位合成与芳醛、巴豆醛、脂质过氧化加合物、天然碱性中心和核糖内酯有关的加合物。交叉链接也将通过此方法生成。第二个主题涉及使用“Carba”嘌呤和嘧啶作为正常碱基和氧化或加成形式的内源性DNA损伤的稳定或不可水解性模拟物。它们将用于：(A)涉及MutY等DNA修复酶作用机制的研究，包括外翻(Flip-out)过程，(B)用于突变机制的研究，以及(C)获得DNA修复酶复合体的晶体结构。