The evolution of plant-associated lifestyles in the Ascomycota and their effectors

子囊菌门植物相关生活方式的演变及其效应子

• 批准号: 2057246
• 金额: --
• 依托单位: Queen Mary University of London
• 依托单位国家: 英国
• 项目类别: Studentship
• 财政年份: 2018
• 资助国家: 英国
• 起止时间: 2018 至 无数据
• 项目状态: 已结题
• 来源: https://gtr.ukri.org/projects?ref=studentship-2057246
• 关键词: evolution; plant; associated; lifestyles; Ascomycota

The Ascomycota form the largest phylum in the fungal kingdom and show a wide diversity oflifestyles, some involving beneficial or harmful associations with plants. Genomic methods canprovide insight into the genetic determinants of these lifestyles. Understanding evolutionarytransitions between fungal endophytes - species which live asymptomatically in plant tissues- and fungal plant pathogens is of major significance in economic and ecological issuesrelating to plant health.To describe the evolutionary origins of the endophytic and plant pathogenic strategies, arobust genomic phylogeny of the Ascomycota is needed with comprehensive taxon sampling.By reconstructing lifestyles and host preferences across ancestral nodes of the phylogeny,the patterns of evolutionary transitions between plant-associated species will be revealed.This framework will also enable us to test hypotheses about how effector gene families haveevolved in independent plant-associated lineages. Effectors, fungal secreted proteins knownto play a role in pathogenesis, have been extensively studied in the context of plant-fungalpathogenic interactions. The role of effector genes in the context of fungal endophytes couldshed light on the level of functional equivalence between plant pathogens and endophytes.

子囊菌门是真菌界中最大的门，并表现出广泛的生活方式多样性，其中一些涉及与植物有益或有害的联系。基因组方法可以深入了解这些生活方式的遗传决定因素。了解内生真菌（无症状地生活在植物组织中的物种）和真菌植物病原体之间的进化转变对于与植物健康相关的经济和生态问题具有重要意义。为了描述内生菌和植物致病策略的进化起源，需要通过全面的分类采样来了解子囊菌门的稳健基因组系统发育。通过重建生活方式和宿主偏好 跨越系统发育的祖先节点，植物相关物种之间的进化转变模式将被揭示。这个框架还将使我们能够检验关于效应基因家族如何在独立的植物相关谱系中进化的假设。效应子是已知在发病机制中发挥作用的真菌分泌蛋白，已在植物-真菌致病相互作用的背景下进行了广泛研究。效应基因在内生真菌中的作用可以揭示植物病原体和内生菌之间功能等价的水平。

项目成果

First Whole Genome Sequence and Flow Cytometry Genome Size Data for the Lichen-Forming Fungus Ramalina farinacea (Ascomycota).

• DOI: 10.1093/gbe/evad074
• 发表时间: 2023-05-07
• 期刊: GENOME BIOLOGY AND EVOLUTION
• 影响因子: 3.3
• 作者: Llewellyn, Theo;Mian, Sahr;Hill, Rowena;Leitch, Ilia J.;Gaya, Ester
• 通讯作者: Gaya, Ester

Lifestyle Transitions in Fusarioid Fungi are Frequent and Lack Clear Genomic Signatures.

• DOI: 10.1093/molbev/msac085
• 发表时间: 2022-04-11
• 期刊: MOLECULAR BIOLOGY AND EVOLUTION
• 影响因子: 10.7
• 作者: Hill, Rowena;Buggs, Richard J. A.;Dang Toan Vu;Gaya, Ester
• 通讯作者: Gaya, Ester

Fusarium and allied fusarioid taxa (FUSA). 1.

• DOI: 10.3114/fuse.2022.09.08
• 发表时间: 2022-06
• 期刊: Fungal systematics and evolution
• 作者: Crous, P W;Sandoval-Denis, M;Costa, M M;Groenewald, J Z;van Iperen, A L;Starink-Willemse, M;Hernandez-Restrepo, M;Kandemir, H;Ulaszewski, B;de Boer, W;Abdel-Azeem, A M;Abdollahzadeh, J;Akulov, A;Bakhshi, M;Bezerra, J D P;Bhunjun, C S;Camara, M P S;Chaverri, P;Vieira, W A S;Decock, C A;Gaya, E;Gene, J;Guarro, J;Gramaje, D;Grube, M;Gupta, V K;Guarnaccia, V;Hill, R;Hirooka, Y;Hyde, K D;Jayawardena, R S;Jeewon, R;Jurjevic, Z;Korsten, L;Lamprecht, S C;Lombard, L;Maharachchikumbura, S S N;Polizzi, G;Rajeshkumar, K C;Salgado-Salazar, C;Shang, Q-J;Shivas, R G;Summerbell, R C;Sun, G Y;Swart, W J;Tan, Y P;Vizzini, A;Xia, J W;Zare, R;Gonzalez, C D;Iturriaga, T;Savary, O;Coton, M;Coton, E;Jany, J-L;Liu, C;Zeng, Z-Q;Zhuang, W-Y;Yu, Z-H;Thines, M
• 通讯作者: Thines, M

Tapping Culture Collections for Fungal Endophytes: First Genome Assemblies for Three Genera and Five Species in the Ascomycota.

• DOI: 10.1093/gbe/evad038
• 发表时间: 2023-03-03
• 期刊: GENOME BIOLOGY AND EVOLUTION
• 影响因子: 3.3
• 作者: Hill, Rowena;Levicky, Quentin;Pitsillides, Frances;Junnonen, Amy;Arrigoni, Elena;Bonnin, J. Miguel;Kermode, Anthony;Mian, Sahr;Leitch, Ilia J.;Buddie, Alan G.;Buggs, Richard J. A.;Gaya, Ester
• 通讯作者: Gaya, Ester

Fungal Planet description sheets: 1284–1382

• DOI: 10.3767/persoonia.2021.47.06
• 发表时间: 2021-12-24
• 期刊: Persoonia : Molecular Phylogeny and Evolution of Fungi
• 作者: Crous PW;Osieck ER;Jurjević Ž;Boers J;van Iperen AL;Starink-Willemse M;Dima B;Balashov S;Bulgakov TS;Johnston PR;Morozova OV;Pinruan U;Sommai S;Alvarado P;Decock CA;Lebel T;McMullan-Fisher S;Moreno G;Shivas RG;Zhao L;Abdollahzadeh J;Abrinbana M;Ageev DV;Akhmetova G;Alexandrova AV;Altés A;Amaral AG;Angelini C;Antonín V;Arenas F;Asselman P;Badali F;Baghela A;Bañares A;Barreto RW;Baseia IG;Bellanger JM;Berraf-Tebbal A;Biketova AY;Bukharova NV;Burgess TI;Cabero J;Câmara MP;Cano-Lira JF;Ceryngier P;Chávez R;Cowan DA;de Lima AF;Oliveira RL;Denman S;Dang QN;Dovana F;Duarte IG;Eichmeier A;Erhard A;Esteve-Raventós F;Fellin A;Ferisin G;Ferreira RJ;Ferrer A;Finy P;Gaya E;Geering AD;Gil-Durán C;Glässnerová K;Glushakova AM;Gramaje D;Guard FE;Guarnizo AL;Haelewaters D;Halling RE;Hill R;Hirooka Y;Hubka V;Iliushin VA;Ivanova DD;Ivanushkina NE;Jangsantear P;Justo A;Kachalkin AV;Kato S;Khamsuntorn P;Kirtsideli IY;Knapp DG;Kochkina GA;Koukol O;Kovács GM;Kruse J;Kumar TK;Kušan I;Læssøe T;Larsson E;Lebeuf R;Levicán G;Loizides M;Marinho P;Luangsa-ard JJ;Lukina EG;Magaña-Dueñas V;Maggs-Kölling G;Malysheva EF;Malysheva VF;Martín B;Martín MP;Matočec N;McTaggart AR;Mehrabi-Koushki M;Mešić A;Miller AN;Mironova P;Moreau PA;Morte A;Müller K;Nagy LG;Nanu S;Navarro-Ródenas A;Nel WJ;Nguyen TH;Nóbrega TF;Noordeloos ME;Olariaga I;Overton BE;Ozerskaya SM;Palani P;Pancorbo F;Papp V;Pawłowska J;Pham TQ;Phosri C;Popov ES;Portugal A;Pošta A;Reschke K;Reul M;Ricci GM;Rodríguez A;Romanowski J;Ruchikachorn N;Saar I;Safi A;Sakolrak B;Salzmann F;Sandoval-Denis M;Sangwichein E;Sanhueza L;Sato T;Sastoque A;Senn-Irlet B;Shibata A;Siepe K;Somrithipol S;Spetik M;Sridhar P;Stchigel AM;Stuskova K;Suwannasai N;Tan YP;Thangavel R;Tiago I;Tiwari S;Tkalčec Z;Tomashevskaya MA;Tonegawa C;Tran HX;Tran NT;Trovão J;Trubitsyn VE;Van Wyk J;Vieira WA;Vila J;Visagie CM;Vizzini A;Volobuev SV;Vu DT;Wangsawat N;Yaguchi T;Ercole E;Ferreira BW;de Souza AP;Vieira BS;Groenewald JZ
• 通讯作者: Groenewald JZ