POSITIONAL CANDIDATE GENE APPROACHES IN ASTHMA GENE DISC

哮喘基因盘中的位置候选基因方法

• 批准号: 6527710
• 负责人: XIPING XU
• 金额: $ 44.55万
• 依托单位: HARVARD SCHOOL OF PUBLIC HEALTH
• 依托单位国家: 美国
• 财政年份: 2000
• 资助国家: 美国
• 起止时间: 2000-09-30 至 2007-08-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/6527710
• 关键词: China; asthma; clinical research; family genetics; gene environment interaction; genetic markers; genetic polymorphism; genetic screening; genotype; haploidy; human subject; immunogenetics; linkage mapping; methacholine; phenotype; rural area

DESCRIPTION (Adapted from the applicant's abstract) The proposed project takes advantage of the rapid progression of the Human Genome Project (HGP) in identifying positional candidate genes and is built on our ongoing asthma gene-mapping study and existent DNA samples in 2,756 nuclear families with at least two siblings with physician-diagnosed asthma and available parents. Our preliminary analysis based on a genome-wide scan on 435 families with both siblings experiencing a positive methacholine challenge test has identified two regions that are significantly linked to asthma related phenotypes. The region near D22S926 on chromosome 22 is significantly linked to FEV1. We have initially identified 6-7 candidate genes in each of the two linkage regions. With the completion of the HGP and availability of more detailed gene annotation in the near future, the list of positional candidate genes will grow. We hypothesize that one or more of the positional candidate genes on our list is associated with asthma intermediate phenotypes with significant linkages to the candidate regions. We have identified 675 families with at least one sibling with a positive methacholine challenge test (PD20 less than or equal to? 16 mg) and high peripheral blood eosinophil count (Panel I Families), and 909 families with at least two siblings with FEV1 measurements available (Panel II Families) to test our hypothesis using the family based association test (FBAT). The DHPLC method, a state-of-the-art mutation detection technology, will be used to rapidly discover a sufficient number of novel single nucleotide polymorphism markers (SNPs) in the selected positional candidate genes. The common polymorphisms of selected candidate genes will be genotyped using oligonucleotide ligation assay (OLA). To incorporate information from two or more SNP loci from multiple related genes and from environmental risk factors in our analyses, we will also assess the contribution of haplotypes and test gene-gene and gene- environment interactions in addition to single locus analysis. There are two unique features to this proposal: (1) the linkages in the two proposed regions are significant; and (2) our large sample size assures adequate power to detect the association. With our expertise in epidemiology, clinical medicine, molecular genetics, biostatistics, and the population resources, we are confident that we can advance the understanding of the genetic determinants of asthma. The findings from the proposed study may lead to improved strategies for prevention, diagnosis, and treatment of this disease. (End of Abstract.)

描述（改编自申请人摘要） 拟议的项目利用了人类的快速发展， 人类基因组计划（HGP）在确定位置候选基因，并建立在 我们正在进行的哮喘基因图谱研究和2，756名患者的现有DNA样本 至少有两个兄弟姐妹患有医生诊断的哮喘的核心家庭 和可用的父母。 我们基于全基因组扫描的初步分析 在435个兄弟姐妹都出现乙酰甲胆碱阳性的家庭中， 挑战性测试确定了两个区域， 哮喘相关表型 22号染色体上D22 S926附近的区域是 与FEV 1密切相关。 我们初步确定了6-7名候选人 两个连锁区中的每一个基因。 随着人类基因组计划的完成， 在不久的将来，更详细的基因注释的可用性， 位置候选基因将生长。 我们假设一个或多个 我们名单上的位置候选基因与哮喘中间型相关 与候选区域具有显著连锁的表型。 我们有 确定了675个至少有一个兄弟姐妹乙酰甲胆碱阳性的家庭， 挑战试验（PD 20小于或等于？16 mg）和高外周血 嗜酸性粒细胞计数（第I组家族），909个家族至少有两个 具有FEV 1测量值的兄弟姐妹（第二组家庭），以测试我们的 使用基于家庭的关联检验（FBAT）。 DHPLC法， 一种最先进的突变检测技术， 发现足够数量的新的单核苷酸多态性标记 在所选择的位置候选基因中的SNP。 常见的多态性 将使用寡核苷酸连接对选定的候选基因进行基因分型 含量测定（奥拉）。 为了整合来自两个或多个SNP基因座的信息， 多个相关基因和环境风险因素在我们的分析中， 还将评估单倍型和测试基因-基因和基因- 环境相互作用，除了单基因座分析。 有两 本提案的独特之处：（1）两个拟议区域的联系 （2）我们的大样本量确保了足够的功效， 检测关联。 凭借我们在流行病学、临床 医学，分子遗传学，生物统计学和人口资源，我们 相信我们可以进一步了解 哮喘的决定因素 拟议研究的结果可能导致 改善预防、诊断和治疗该疾病的策略。 (End抽象）。