Mechanism of phage P22 assembly, a model dsDNA virus

噬菌体 P22 组装机制（双链 DNA 病毒模型）

• 批准号: 7262176
• 负责人: CAROLYN M TESCHKE
• 金额: $ 31.44万
• 依托单位: UNIVERSITY OF CONNECTICUT STORRS
• 依托单位国家: 美国
• 财政年份: 2007
• 资助国家: 美国
• 起止时间: 2007-04-15 至 2011-03-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7262176
• 关键词: Affect; Affinity; Amino Acid Substitution; Amino Acids; Antiviral Agents; Bacteriophage P22; Bacteriophages; Binding; Biochemical; Biochemical Genetics; Biological Models; C-terminal; Capsid; Capsid Proteins; Charge; Complement; Complex; Condition; DNA Packaging; Development; Dissociation; Double Stranded DNA Virus; Electron Microscopy; Entropy; Equilibrium; Genetic; Goals; Heating; Helix (Snails); Herpesviridae; In Vitro; Label; Macromolecular Complexes; Maps; Microtomy; Modeling; Molecular; Molecular Biology; Molecular Conformation; Molecular Structure; Mutagenesis; Nature; Pharmaceutical Preparations; Play; Process; Proteins; Public Health; Rate; Reaction; Research; Role; Salts; Scaffolding Protein; Simplexvirus; Site; Sodium Chloride; Solutions; Solvents; System; Techniques; Thermodynamics; Variant; Viral; Virion; Virus; Virus Assembly; Work; base; ear helix; enthalpy; in vivo; nanoGold; particle; protein protein interaction; self organization; therapeutic target

DESCRIPTION (provided by applicant): Despite many years of research, a comprehensive understanding of the process of viral capsid assembly at the molecular level has not yet been developed. The long-term goal of this project is to understand the mechanistic details of assembly of icosahedral viruses, which can then be used as the basis for development of antivirals targeted at capsid assembly. We propose to investigate assembly of the dsDNA bacteriophage P22, which provides an excellent model for icosahedral virus assembly. Our specific hypothesis is that viral capsid assembly is driven by multiple specific weak protein:protein interactions of the subunits during assembly. Phage P22 first assembles a procapsid into which dsDNA is packaged. In vitro procapsid-like particles can be assembled simply by mixing together coat and scaffolding proteins in the appropriate conditions. The proposed work combines rigorous thermodynamic analysis of assembly with biochemical and genetic approaches. We propose to first characterize the thermodynamics of P22 procapsid assembly to determine how ionic interactions, and entropic and enthalpic forces are involved in correct assembly of capsids. The role of scaffolding protein in proper assembly will be described, also by determining thermodynamic values for the assembly reaction by using scaffolding protein variants. The controlled of addition of capsid subunits during elongation will be characterized through equilibrium analysis of the association of subunits with partial capsids. Secondly, the sites and nature of the interaction between coat and scaffolding protein will be determined by a combination of molecular biology, phage genetics and biochemical techniques. Lastly, how scaffolding protein is organized within procapsids will be established through techniques using electron microscopy. The research proposed is relevant to public health because thoroughly characterizing capsid assembly will allow the step(s) that are the best targets for anti-viral drugs to be identified. In addition, these studies will highlight the important interactions between capsid subunits, which are required for proper assembly of viruses.

描述（由申请人提供）：尽管进行了多年的研究，但尚未在分子水平上全面了解病毒衣壳组装过程。该项目的长期目标是了解二十面体病毒组装的机制细节，然后可以将其用作开发针对衣壳组装的抗病毒药物的基础。我们建议研究 dsDNA 噬菌体 P22 的组装，它为二十面体病毒组装提供了一个极好的模型。我们的具体假设是，病毒衣壳组装是由组装过程中亚基的多个特定弱蛋白质：蛋白质相互作用驱动的。噬菌体 P22 首先组装出包装有 dsDNA 的原衣壳。体外衣壳样颗粒可以通过在适当的条件下将外壳蛋白和支架蛋白简单地混合在一起来组装。拟议的工作将严格的组装热力学分析与生化和遗传方法结合起来。我们建议首先表征 P22 衣壳组装的热力学，以确定离子相互作用以及熵力和焓力如何参与衣壳的正确组装。将通过使用支架蛋白变体确定组装反应的热力学值来描述支架蛋白在正确组装中的作用。延伸过程中衣壳亚基添加的控制将通过亚基与部分衣壳关联的平衡分析来表征。其次，外壳蛋白和支架蛋白之间相互作用的位点和性质将通过分子生物学、噬菌体遗传学和生化技术的组合来确定。最后，将通过电子显微镜技术确定支架蛋白在衣壳内的组织方式。拟议的研究与公共卫生相关，因为彻底表征衣壳组装将有助于确定抗病毒药物最佳靶标的步骤。此外，这些研究将强调衣壳亚基之间的重要相互作用，这是病毒正确组装所必需的。