Ultrafast Time-Resolved Crystallography on Scapharca Hb

Scapharca Hb 的超快时间分辨晶体学

• 批准号: 7161771
• 负责人: WILLIAM E ROYER
• 金额: $ 24.85万
• 依托单位: UNIV OF MASSACHUSETTS MED SCH WORCESTER
• 依托单位国家: 美国
• 财政年份: 2004
• 资助国家: 美国
• 起止时间: 2004-01-01 至 2007-12-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7161771
• 关键词: Active Sites; Address; Allosteric Regulation; Behavior; Biological Models; Biological Process; Biology; Class; Collaborations; Communication; Complement; Complex; Coupled; Crystallography; DNA Sequence Rearrangement; Dissociation; Distal; End Point; European; Exhibits; France; Generations; Goals; Heme; Hemeproteins; Hemoglobin; Investigation; Japan; KLK3 gene; Kinetics; Knowledge; Lasers; Ligand Binding; Ligands; Localized; Mediating; Methods; Movement; Mutagenesis; Myoglobin; Numbers; Pathway interactions; Photons; Physiologic pulse; Process; Property; Proteins; Pulse taking; Range; Reaction; Resolution; Roentgen Rays; Scapharca inaequivalvis dimeric hemoglobin; Series; Signal Transduction; Site; Solvents; Source; Spectrum Analysis; Structure; Synchrotrons; System; Techniques; Testing; Time; Work; base; density; insight; molecular dynamics; mutant; nanosecond; photolysis; research study; sound; synchrotron radiation; time resolved data

DESCRIPTION (provided by applicant): In order to be biologically useful, protein molecules rely on structural transitions to carry out their function. Despite their importance, it is usually difficult to follow such conformational rearrangements as they occur. Recent advances in time-resolved crystallography have extended its capability into the nanosecond (ns) time ranges required to observe such structural transitions in real time. We will apply time-resolved crystallographic techniques to a cooperative dimeric hemoglobin from Scapharca inaequivalvis that has proven to be an excellent model system for studying allosteric protein behavior. This protein is exceptionally well suited for such an analysis due to properties that include the ability to observe cooperative ligand binding behavior within the crystalline state and the diffracting power of its crystals. We propose to use this technique to investigate structural changes induced by ligand photo-dissociation. Structural changes will be triggered by short (10 ns) laser pulses and probed by 150 picosecond (ps) to 15ns X-ray pulses. This type of experiment can be successfully conducted at third generation synchrotron sources such as the Advanced Photon Source (APS - Argonne, USA), European Synchrotron Radiation Facility (ESRF - Grenoble, France) and SPring8 (Tsukuba, Japan), as extensive experiments on myoglobin and photoactive yellow protein have demonstrated. We have conducted preliminary experiments on wildtype and mutants of this dimeric hemoglobin at ESRF and APS that clearly show the feasibility of this approach. Our results to date show the loss of bound ligand coupled with heme doming and movement of the protein atoms, suggesting important transient intermediates at several time points between l ns and 25ns following ligand release. Density for released ligand suggests it follows an alternate pathway in transit between the active site and solvent. Our goal is to combine time-resolved and ultrahigh resolution crystallography with mutagenesis, spectroscopy and molecular dynamics simulation to gain an unprecedented understanding of principles by which conformational rearrangements mediate allosteric regulation of biological processes. Understanding such principles will aid in the rational manipulation of a number of biological processes.

描述（由申请人提供）：为了具有生物学用途，蛋白质分子依赖于结构转变来执行其功能。 尽管它们很重要，但通常很难在它们发生时跟踪这种构象重排。 时间分辨晶体学的最新进展已经将其能力扩展到纳秒（ns）的时间范围内，需要在真实的时间观察这种结构转变。 我们将应用时间分辨晶体学技术的合作二聚血红蛋白从Scapharca inaequalivis已被证明是一个很好的模型系统，用于研究变构蛋白的行为。 这种蛋白质特别适合于这种分析，因为它具有观察晶体状态内的协同配体结合行为的能力及其晶体的衍射能力。 我们建议使用这种技术来研究配体光解引起的结构变化。 结构变化将由短（10 ns）激光脉冲触发，并由150皮秒（ps）至15 ns的X射线脉冲探测。 这种类型的实验可以在第三代同步加速器源如高级光子源（APS -阿贡，美国）、欧洲同步加速器辐射设施（ESRF -格勒诺布尔，法国）和SPring 8（筑波，日本）成功地进行，如对肌红蛋白和光敏黄蛋白的广泛实验所证明的。 我们已经在ESRF和APS对这种二聚血红蛋白的野生型和突变体进行了初步实验，清楚地表明了这种方法的可行性。 我们的研究结果表明，到目前为止，结合配体的损失加上血红素圆顶和运动的蛋白质原子，这表明重要的瞬态中间体在几个时间点之间的1 ns和25 ns配体释放。 释放的配体的密度表明其在活性位点和溶剂之间的运输中遵循替代途径。 我们的目标是将联合收割机时间分辨和高分辨晶体学与诱变、光谱学和分子动力学模拟相结合，以获得对构象重排介导生物过程变构调节的原理的前所未有的理解。 理解这些原理将有助于合理地操纵一些生物过程。