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Mining the aspergillus nidulans secondary metabolome

挖掘构巢曲霉次级代谢组

基本信息

批准号：
7813486
负责人：
BERL Ray OAKLEY
金额：
$ 58.96万
依托单位：
UNIVERSITY OF KANSAS LAWRENCE
依托单位国家：
美国
项目类别：
财政年份：
2009
资助国家：
美国
起止时间：
2009-09-30 至 2012-08-31
项目状态：
已结题

来源：
https://reporter.nih.gov/project-details/7813486
关键词：
Acids Aflatoxins Anabolism Antibiotic Resistance Anticholesteremic Agents Appearance Aspergillus Aspergillus nidulans Autonomous Replication Biological Factors Carbon Cell Nucleus Cells Chromatin Chromosomes Cloning Cluster Analysis Collection Communities Complement Complex Cosmid Vector Cosmids DNA DNA Restriction Enzymes Data Decision Making Detection Diagnostic Diagnostic tests Direct Repeats Distant Emericella Engineering Enzymes Equation Escherichia coli Event Excision Fermentation Fibrinogen Figs - dietary Frequencies Funding Gel Gene Cluster Gene Targeting Genes Genetic Genetic Recombination Genome Genomic Library Genomics Goals Grant Growth Homologous Gene Human Individual Institutes Joints Knock-out Learning Length Libraries Ligation Lovastatin Maintenance Maps Mass Spectrum Analysis Methods Mining Molecular Molecular Genetics Molecular Weight Monascus Mutation Natural Products Chemistry Organism Oryza Pathogenicity Pathway interactions Plasmid Cloning Vector Plasmids Probability Procedures Production Program Research Project Grants Property Proteins Publications Publishing Pyrithiamine Reaction Recovery Recycling Regulation Relative (related person)Repression Research Research Personnel Resistance Resources Riboflavin Running Sepharose Side Site Sorting - Cell Movement Source Sterigmatocystin Structure Sucrose System Testing Time Toxic effect United States National Institutes of Health Universities Visual Wisconsin Work Writing base combat density design experience fungal genetics fungus gene replacement genome database genome sequencing homologous recombination improved insight interest liquid chromatography mass spectrometry liquid chromatography mass spectroscopy novel particle pathogen pressure programs promoter public health relevance recombinase research study response sound success tool transcription factor vector volunteer

项目摘要

DESCRIPTION (provided by applicant): This is an application for a competitive revision of Program Project grant (5P01GM084077) entitled "Mining the Aspergillus nidulans Secondary Metabolome," It is written in response to Notice Number NOT-OD-09-058, Notice Title: NIH Announces the Availability of Recovery Act Funds for Competitive Revision Applications. The goal of the Program Project grant as funded is to use a synergistic combination of genomics, molecular genetics and natural products chemistry to mine the Aspergillus nidulans secondary metabolome for useful natural products. Although the grant has been in effect for less than one year, we are making excellent progress and wish to extend this approach to the hundreds of other fungi which likely make medically useful secondary metabolites, but lack the excellent genetic and molecular genetics tools that have been developed for A. nidulans. Since developing molecular genetic systems for these fungi is likely to be difficult and extremely time consuming, we wish, instead, to develop A. nidulans as a system for heterologous expression of secondary metabolite gene clusters from other fungi. In the requested two year period of support, we propose to improve A. nidulans as a host organism for heterologous expression of secondary metabolites by deleting A. nidulans secondary metabolite gene clusters that is expressed at high levels under normal growth conditions. This may allow greater production of target secondary metabolites, and should certainly allow target secondary metabolites to be detected more easily by mass spectroscopy. We will then develop two cosmid-based systems for expression of gene clusters from other fungi. We will develop the system using gene clusters of Aspergillus terreus, an economically and medically important fungus with a sequenced genome, but with a much less well developed set of molecular genetics tools than A. nidulans. We will develop a system for integrating gene clusters from A. terreus into the A. nidulans genome and a system for maintenance of A. terreus gene clusters on autonomously replicating cosmid vectors. We will analyze production of secondary metabolites by liquid chromatography/mass spectroscopy and develop procedures that allow us to obtain production of adequate quantities of secondary metabolites for purification and structural analysis. PUBLIC HEALTH RELEVANCE: Fungal secondary metabolites are a rich source of medically valuable compounds. Molecular genetics approaches in Aspergillus nidulans are providing a very efficient system for identifying new secondary metabolites and deducing the steps of the biosynthetic pathways that produce them. This application will allow us to apply the same approach to other fungi that lack the molecular tools available for A. nidulans.

描述（由申请人提供）：这是一份竞争性修订项目资助（5 P01 GM 084077）的申请，标题为“挖掘构巢曲霉次级代谢组”，它是为了回应通知编号NOT-OD-09-058，通知标题：NIH宣布恢复法案资金的可用性，用于竞争性修订申请。该项目资助的目标是利用基因组学，分子遗传学和天然产物化学的协同组合来挖掘构巢曲霉的次级代谢组，以获得有用的天然产物。虽然该资助已经生效不到一年，但我们正在取得巨大进展，并希望将这种方法扩展到数百种其他真菌，这些真菌可能产生医学上有用的次级代谢产物，但缺乏为A开发的优秀遗传和分子遗传学工具。nidulans。由于开发这些真菌的分子遗传系统可能是困难的，而且非常耗时，我们希望，相反，开发A。作为异源表达来自其它真菌的次级代谢物基因簇的系统。在要求的两年支持期内，我们建议改进A。nidulans作为异源表达次级代谢产物的宿主生物。构巢菌次级代谢物基因簇在正常生长条件下高水平表达。这可以允许更大的目标次级代谢产物的产生，并且肯定应该允许通过质谱更容易地检测目标次级代谢产物。然后，我们将开发两个基于粘粒的系统，用于表达来自其他真菌的基因簇。我们将使用土曲霉的基因簇开发该系统，土曲霉是一种具有经济和医学重要性的真菌，具有测序的基因组，但其分子遗传学工具远不如A。nidulans。我们将开发一个系统，整合基因簇从A。terreus进入A. nidulans基因组和A.自主复制粘粒载体上的terreus基因簇。我们将通过液相色谱/质谱分析次级代谢产物的产生，并开发程序，使我们能够获得足够数量的次级代谢产物进行纯化和结构分析。公共卫生相关性：真菌次级代谢产物是具有医学价值的化合物的丰富来源。构巢曲霉的分子遗传学方法为鉴定新的次级代谢产物和推导产生它们的生物合成途径的步骤提供了非常有效的系统。这一应用将使我们能够将同样的方法应用于其他缺乏可用于A的分子工具的真菌。nidulans。