DEVELOPMENT OF MEMBRANE PROTEIN STRUCTURE

膜蛋白结构的发育

• 批准号: 7992507
• 负责人: PHILIP J THOMAS
• 金额: $ 9.89万
• 依托单位: UT SOUTHWESTERN MEDICAL CENTER
• 依托单位国家: 美国
• 财政年份: 2010
• 资助国家: 美国
• 起止时间: 2010-01-01 至 2010-03-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7992507
• 关键词: ATP-Binding Cassette Transporters; Address; Affect; Alleles; Amino Acids; Appearance; Binding; Biochemical; Biological; Biological Assay; Cell membrane; Cells; Chloride Channels; Commit; Complex; Computing Methodologies; Cystic Fibrosis; Cystic Fibrosis Transmembrane Conductance Regulator; Data; Defect; Development; Development Plans; Disease; Enzymes; Equilibrium; Event; Family; Genes; Genetic; Grant; Hereditary Disease; Hydrolysis; Integral Membrane Protein; Kinetics; Ligands; Measurable; Mediating; Membrane Proteins; Methods; Modeling; Molecular; Monitor; Mutation; Nucleotides; Pathway interactions; Positioning Attribute; Process; Proteins; Quality Control; Regulation; Research; Resolution; Roentgen Rays; Role; Side; Site; Solvents; Staging; Structural Models; Structure; Suppressor Mutations; Surface; Temperature; Testing; Translating; Translation Process; Translations; Transmembrane Domain; base; conformer; crosslink; cystic fibrosis patients; design; disease-causing mutation; insight; interest; loss of function; member; molecular pathology; mutant; nucleotide binding fold; polypeptide; protein folding; protein misfolding; protein structure; public health relevance; therapeutic target; trafficking

DESCRIPTION (provided by applicant): The cystic fibrosis conductance regulator (CFTR) is a polytopic integral membrane protein that is a member of the ABC transporter supergene family. These proteins are composed of two cytosolic nucleotide binding domains (NBDs) and two transmembrane domains (TMDs) that fold and associate to form the functional ABC enzymes which utilize ATP binding and hydrolysis to mediate transmembrane events. In contrast to other ABC transporters, CFTR also contains a unique, additional, largely-disordered portion called the R region. Mutations in the gene that encodes CFTR cause cystic fibrosis, typically by disrupting the folding and assembly of the protein into its functional native structure. The misfolded mutant protein is recognized by quality control proteins in the cell that target it for degradation. The most common of these mutations is ?F508 which is found on the surface of NBD1 in a region that mediates interactions with the TMDs in other ABC transporters. Thus, three fundamental questions about the molecular pathology of the ?F508 mutation arise. Does the mutation disrupt the folding of the NBD1? Does the mutation disrupt the association of NBD1 and other domains of CFTR or its partner proteins? How is CFTR that is not efficiently folded identified and what is the committed recognition step? Three specific aims are proposed to address these questions and, further, to provide insight into the more general process of polytopic membrane protein folding. They are: Define the effects of the ?F508 mutation on the folding and dynamics of NBD1. The native states of wild type and ?F508 NBD1 are remarkably similar, but the mutant more readily populates a partially folded state. The structure and dynamics of this state will be characterized. Other residues that interact with F508 to affect conversions between these states will be identified using computational and genetic approaches. Elucidate the effects of the ?F508 mutation on the interactions of NBD1 with other domains of CFTR. Recent crystal structures indicate that the 508 side chain is exposed on the surface of NBD1 near a predicted interface with intracellular loops (ICLs) connecting the transmembrane spans of CFTR. Using cell biological, biochemical, structural, and computational methods, the ICLs that interact with NBD1 will be identified and the effect of the ?F508 mutation on the strength of the interaction determined. Extant methods for monitoring interactions with the R region and other domains will also be utilized. Identify the proteins that interact with the nascent CFTR chain at the earliest steps of folding and those that interact when folding is disrupted by disease-causing mutations such as ?F508. A powerful biosynthetic method of incorporating site-specific photoaffinity probes in defined CFTR nascent chains will be used to identify proteins that interact during the earliest steps of folding and integration. Of particular interest are the identities of the proteins preliminary data indicate preferentially recognize nascent chains with specific CF-causing mutations. These studies are necessary for a fundamental understanding of the development of membrane protein structure and strategies to circumvent the molecular pathology of CF. PUBLIC HEALTH RELEVANCE. Most cases of cystic fibrosis, a common fatal genetic disease, are caused by mutations that interfere with the assembly of the cystic fibrosis transmembrane conductance regulator (CFTR) protein. The studies proposed will elucidate the details of how the disease-causing mutations interfere with this process. Understanding the assembly process, and, thus, the detailed molecular pathology, will provide important information for developing targeted therapeutics for cystic fibrosis.

描述（由申请人提供）：囊性纤维化传导调节因子（CFTR）是一种多位整合膜蛋白，是ABC转运蛋白超基因家族的成员。这些蛋白质由两个胞质核苷酸结合结构域（NBD）和两个跨膜结构域（TMD）组成，其折叠并缔合以形成功能性ABC酶，其利用ATP结合和水解来介导跨膜事件。与其他ABC转运蛋白相比，CFTR还包含一个独特的、额外的、大量无序的部分，称为R区。编码CFTR的基因突变通常通过破坏蛋白质折叠和组装成其功能性天然结构来引起囊性纤维化。错误折叠的突变蛋白被细胞中的质量控制蛋白识别，靶向它进行降解。这些突变中最常见的是什么？F508，其存在于NBD 1表面的一个区域中，该区域介导与其他ABC转运蛋白中的TMD的相互作用。因此，三个基本问题的分子病理学？F508突变出现。突变会破坏NBD1的折叠吗？突变是否破坏了NBD1与CFTR或其伴侣蛋白的其他结构域的关联？如何识别未有效折叠的CFTR？承诺的识别步骤是什么？提出了三个具体的目标，以解决这些问题，并进一步提供深入了解更一般的过程中的多位膜蛋白折叠。它们是：定义的影响？F508突变对NBD 1折叠和动力学的影响。野生型的原生状态和？F508 NBD1非常相似，但突变体更容易形成部分折叠状态。这种状态的结构和动力学的特点。与F508相互作用以影响这些状态之间的转换的其他残基将使用计算和遗传方法来鉴定。解释的影响？F508突变对NBD1与CFTR其他结构域相互作用的影响。最近的晶体结构表明，508侧链暴露在NBD 1的表面上，靠近与连接CFTR跨膜跨度的细胞内环（ICL）的预测界面。使用细胞生物学，生物化学，结构和计算方法，与NBD1相互作用的ICLs将被确定和影响？F508突变对相互作用的强度进行测定。还将利用用于监测与R区和其他结构域的相互作用的现有方法。确定在折叠的最早阶段与新生CFTR链相互作用的蛋白质，以及当折叠被致病突变破坏时相互作用的蛋白质，例如？F508一个强大的生物合成方法，将位点特异性的光亲和探针在定义的CFTR新生链将被用来识别蛋白质的折叠和整合的最早的步骤过程中相互作用。特别感兴趣的是蛋白质的身份初步数据表明优先识别具有特定CF引起突变的新生链。这些研究是必要的膜蛋白结构的发展和战略，以规避CF的分子病理学的基本理解。公共卫生相关性。囊性纤维化是一种常见的致命遗传病，大多数囊性纤维化病例是由干扰囊性纤维化跨膜传导调节因子（CFTR）蛋白组装的突变引起的。拟议的研究将阐明致病突变如何干扰这一过程的细节。了解组装过程，从而了解详细的分子病理学，将为开发囊性纤维化的靶向治疗提供重要信息。