RNA Aptamer-Based Screen for Selective Inhibitors of GRK2

基于 RNA 适体的 GRK2 选择性抑制剂筛选

• 批准号: 8063896
• 负责人: John Tesmer
• 金额: $ 3.75万
• 依托单位: UNIVERSITY OF MICHIGAN AT ANN ARBOR
• 依托单位国家: 美国
• 财政年份: 2010
• 资助国家: 美国
• 起止时间: 2010-05-01 至 2012-04-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8063896
• 关键词: ADRBK1 gene; Active Sites; Adrenal Glands; Affinity; Arrestins; Beta-Adrenergic Receptor Kinase 1; Binding; Binding Sites; Biological Assay; Biological Sciences; Cardiac; Cardiovascular Diseases; Cardiovascular Physiology; Catecholamines; Cell Membrane Permeability; Cell physiology; Cells; Chemicals; Collaborations; Complex; Engineering; Exhibits; Family; Flow Cytometry; Fluorescence; G Protein-Coupled Receptor Genes; G Protein-Coupled Receptor Kinase Family; Genomics; Goals; Heart Diseases; Heart failure; Heterotrimeric GTP-Binding Proteins; Institutes; Kinetics; Link; Lobe; Michigan; Molecular; Molecular Bank; Neuraxis; Nucleotides; Peptides; Permeability; Phosphotransferases; Physiological; Play; Production; Protein Kinase; Proteins; RNA; RNA Binding; Reporting; Role; Signal Transduction; Site; Stimulus; Structure; Surface; Tail; Testing; Therapeutic; Therapeutic Agents; Transgenic Organisms; Universities; aptamer; base; counterscreen; design; human disease; improved; inhibitor/antagonist; interest; mouse model; mutant; novel; overexpression; prevent; protein kinase C kinase; public health relevance; receptor; sangivamycin; small molecule; small molecule libraries; statistics; therapeutic target; tool

DESCRIPTION (provided by applicant): A small family of G protein-coupled receptor (GPCR) kinases (GRKs) negatively regulates heterotrimeric G protein signaling by phosphorylating multiple sites in the cytoplasmic loops and tails of activated GPCRs. Through this process, cells adapt to persistent stimuli that act at GPCRs and protect themselves from damage incurred by sustained signaling. GRKs can also play maladaptive roles in human disease. GRK2 is overexpressed during heart failure, which not only uncouples cardiac receptors from the central nervous system, but also promotes the release of excessive amounts of catecholamines from the adrenal gland. Inhibition of GRK2 by transgenic peptides prevents cardiac failure in mouse models, suggesting that GRK2 is an excellent target for the treatment of heart disease. However, selective small molecule inhibitors of GRKs have not been reported, perhaps due to high homology among the active sites of GRKs and other AGC kinases. Over the last six years, our lab has made significant progress in understanding the structure and function of GRKs, and we are currently investigating the molecular basis for the selective inhibition of GRK2 by a high affinity RNA aptamer. Our preliminary crystallographic studies of this complex demonstrate that the aptamer binds primarily to the large lobe of the kinase domain, where it blocks the entrance to the nucleotide binding site of the kinase domain. We hypothesize that this RNA aptamer can be used in a displacement assay to identify small molecules that bind to regions on GRK2 outside of its active site that are also critical for activity. We have designed improved versions of the original RNA aptamer for use in a robust flow cytometry protein interaction assay to screen for compounds that compete with RNA binding to GRK2. In collaboration with the Center for Chemical Genomics at the University of Michigan, we have conducted a preliminary HTS of ~40,000 compounds with excellent statistics. Using activity-based secondary screens, we will confirm which hits derived from this screen and those from screens conducted at a Molecular Libraries Probe Production Center bind directly to GRK2 and inhibit kinase activity. These compounds will be further characterized to establish membrane permeability, their mode of inhibition, and their selectivity for GRK2. Although all active molecules are of interest, small molecules that do not exhibit competitive inhibition with ATP are of particular importance because they would likely represent novel and selective therapeutic leads for the treatment of heart disease. PUBLIC HEALTH RELEVANCE: GRK2 is strongly linked to cardiovascular physiology and disease. Our flow cytometry protein interaction assay will allow us to rapidly screen large libraries of small molecules with the goal of identifying compounds that interfere with a high-affinity RNA aptamer that selectively binds to the kinase domain of GRK2. These compounds have the potential to interact with novel sites on the surface of the kinase domain and thus serve as selective inhibitors of GRK2.

描述（由申请人提供）：一个小的G蛋白偶联受体（GPCR）激酶家族（GRKs）通过磷酸化激活GPCR的细胞质环和尾部的多个位点负性调节异三聚体G蛋白信号传导。通过这一过程，细胞适应作用于gpcr的持续刺激，并保护自己免受持续信号引起的损伤。GRKs也可以在人类疾病中发挥不适应的作用。GRK2在心力衰竭期间过度表达，这不仅使心脏受体与中枢神经系统分离，而且还促进肾上腺释放过量的儿茶酚胺。在小鼠模型中，通过转基因肽抑制GRK2可预防心力衰竭，这表明GRK2是治疗心脏病的一个极好的靶点。然而，选择性的GRKs小分子抑制剂尚未被报道，这可能是由于GRKs和其他AGC激酶的活性位点高度同源性。在过去的六年里，我们的实验室在了解GRKs的结构和功能方面取得了重大进展，我们目前正在研究高亲和力RNA适体选择性抑制GRK2的分子基础。我们对该复合物的初步晶体学研究表明，适体主要与激酶结构域的大叶结合，在那里它阻断了进入激酶结构域核苷酸结合位点的入口。我们假设这种RNA适体可以用于置换试验，以识别与GRK2活性位点外区域结合的小分子，这些小分子对活性也至关重要。我们设计了原始RNA适配体的改进版本，用于流式细胞术蛋白相互作用测定，以筛选与RNA结合GRK2竞争的化合物。在与密歇根大学化学基因组学中心的合作下，我们已经对大约40,000种化合物进行了初步的HTS，并具有出色的统计数据。使用基于活性的二次筛选，我们将确认从该筛选中获得的hit和从Molecular Libraries Probe Production Center进行的筛选中获得的hit直接结合GRK2并抑制激酶活性。这些化合物将进一步表征以确定膜通透性，它们的抑制模式和它们对GRK2的选择性。尽管所有的活性分子都是我们感兴趣的，但不表现出与ATP竞争抑制的小分子尤其重要，因为它们可能代表着治疗心脏病的新的和选择性的治疗线索。