Intense Validation of a Mathematical Model of Herpes Simplex Virus-2 Pathogenesis

单纯疱疹病毒 2 型发病机制数学模型的强化验证

• 批准号: 8034802
• 负责人: Joshua Tisdell Schiffer
• 金额: $ 12.8万
• 依托单位: UNIVERSITY OF WASHINGTON
• 依托单位国家: 美国
• 财政年份: 2010
• 资助国家: 美国
• 起止时间: 2010-03-01 至 2015-02-28
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8034802
• 关键词: Afferent Neurons; Africa; Anatomy; Antigen-Presenting Cells; Antiviral Agents; Area; Award; Biopsy; CD4 Positive T Lymphocytes; CD8-Positive T-Lymphocytes; CD8B1 gene; Cell Density; Cells; Clinical; Clinical Research; Clinical Trials; Communicable Diseases; Data; Development; Drug resistance; Environment; Epidemic; Epidemiology; Epithelial Cells; Fellowship; Frequencies; Funding; Ganglia; Genital system; Goals; HIV; HIV Seropositivity; HIV-1; Heterogeneity; Hour; Human; Human Herpesvirus 2; Immune; Immune response; Individual; Infection; Infiltration; Kinetics; Laboratories; Lesion; Life Cycle Stages; Link; Longevity; Lymphocyte antigen; Measurement; Measures; Mentors; Modeling; Mucosal Immunity; Mucous Membrane; Neurons; Outcome; Participant; Pathogenesis; Patients; Peripheral; Persons; Phase; Plasma; Production; Protocols documentation; Recurrence; Regulation; Relative (related person); Research; Risk Factors; Running; Sampling; Sampling Studies; Severities; Sexual Transmission; Simplexvirus; Simulate; Source; Staging; Structure; Study Subject; Surface; Swab; T-Lymphocyte; Techniques; Time; Training Programs; Ulcer; Universities; Validation; Viral; Viral Load result; Virus; Washington; Work; antiretroviral therapy; base; career; density; design; genital herpes; insight; mathematical model; novel; particle; public health relevance; response; transmission process; viral detection

DESCRIPTION (provided by applicant): Dr. Joshua T Schiffer is completing Infectious Diseases fellowship and an MS degree in Epidemiology at the University of Washington in 2009. This proposal describes a 5-year training program, which will allow him to develop an independent academic career in clinical research and mathematical modeling of genital herpes simplex virus-2 (HSV-2) infection. Dr. Lawrence Corey is an internationally renowned leader in clinical HSV-2 research and is the mentor for this award. HSV-2 is the most prevalent cause of genital ulcers worldwide and has emerged as a significant risk factor for acquisition and transmission of HIV. HSV-2 transmission most frequently occurs during periods of asymptomatic genital shedding. Our group has recently used intensive sampling (swabbing the genital surfaces 4 times per day) to demonstrate that the majority of genital shedding episodes last less than 12 hours, suggesting a frequent reactivation rate from the ganglia and a brisk peripheral immune response. We recently designed a novel mathematical model of HSV replication and immune response that we fit to quantitative HSV PCR data derived from daily genital swabs performed during a genital lesion. The model was then run in a stochastic format over 365 days leading to novel hypotheses regarding pathogenesis. The goal of the current proposal is to prove several of these hypotheses by linking our model to more detailed prospectively gathered data including HSV copy number from frequent genital PCR swabs, CD8+ T-cell density from serial biopsies, and lesion size from photographs and serial measurements. We will also obtain individual parameter values for patients using experimental techniques. Aim 1 describes our protocol for gathering this data in 20 HIV positive and 20 HIV negative participants. In Aim 2, we propose performing biopsies before, and deriving model parameters during, successive shedding episodes in our participants. We seek to prove that CD8+ T-cell expansion will occur only during lesional shedding episodes but not during smaller low-copy shedding episodes, and that CD8+ T-cell density at episode onset inversely correlates with lesion size and peak HSV copy number. In Aim 3, we will swab patients intensively for 60 days to determine shedding frequency, and follow clinically for a year to determine recurrence frequency. We will then use prediction models to determine model parameters predict heterogeneity in these outcomes. PUBLIC HEALTH RELEVANCE: The model is novel in the modeling field based on it stochastic format, its focus on mucosal immunity, and on its tight linkage to detailed sequential quantitative virologic and immune cell data. The goal of our current funding application is to validate the model's initial prediction and parameter estimates with intensive clinical sampling of study subjects, and individualized laboratory verification of model parameters.

描述（由申请人提供）：约书亚T希弗博士正在完成传染病奖学金和流行病学硕士学位在华盛顿大学在2009年。该提案描述了一个为期5年的培训计划，这将使他能够在生殖器单纯疱疹病毒-2（HSV-2）感染的临床研究和数学建模方面发展独立的学术生涯。Lawrence Corey博士是国际知名的HSV-2临床研究领导者，也是该奖项的导师。HSV-2是全世界生殖器溃疡最普遍的原因，并已成为获得和传播HIV的重要风险因素。HSV-2传播最常发生在无症状的生殖器脱落期间。我们小组最近使用密集采样（每天擦拭生殖器表面4次）来证明大多数生殖器脱落事件持续不到12小时，这表明神经节的频繁再激活率和活跃的外周免疫反应。我们最近设计了一种新的数学模型HSV复制和免疫反应，我们适合定量HSV PCR数据来自日常生殖器拭子在生殖器病变。然后，该模型以随机格式运行365天，导致关于发病机制的新假设。目前建议的目标是通过将我们的模型与更详细的前瞻性收集的数据联系起来来证明其中的几个假设，这些数据包括来自频繁生殖器PCR拭子的HSV拷贝数，来自连续活检的CD 8 + T细胞密度，以及来自照片和连续测量的病变大小。我们还将使用实验技术获得患者的个体参数值。目的1描述了我们的协议收集此数据在20个HIV阳性和20个HIV阴性的参与者。在目标2中，我们建议在我们的参与者中连续脱落发作之前进行活检，并在连续脱落发作期间导出模型参数。我们试图证明，CD 8 + T细胞扩增将只发生在病变脱落发作，但不是在较小的低拷贝脱落发作，发作时的CD 8 + T细胞密度与病变大小和峰值HSV拷贝数呈负相关。在目标3中，我们将对患者进行60天的密集拭子，以确定脱落频率，并进行一年的临床随访，以确定复发频率。然后，我们将使用预测模型来确定模型参数，以预测这些结果的异质性。 公共卫生相关性：该模型是新的建模领域的基础上，它的随机格式，其重点是粘膜免疫，并在其紧密联系，详细的连续定量病毒学和免疫细胞数据。我们目前的资助申请的目标是通过对研究对象进行密集的临床采样以及对模型参数进行个性化的实验室验证来验证模型的初始预测和参数估计。