Purchase of a Liquid Chromatograph-Orbitrap VELOS mass spectrometer

购买液相色谱-Orbitrap VELOS 质谱仪

• 批准号: 8052978
• 负责人: Sonja Hess
• 金额: $ 60万
• 依托单位: CALIFORNIA INSTITUTE OF TECHNOLOGY
• 依托单位国家: 美国
• 财政年份: 2011
• 资助国家: 美国
• 起止时间: 2011-06-01 至 2012-05-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8052978
• 关键词: Alzheimer' s Disease; Area; Autoimmune Diseases; Bioinformatics; Biological; California; Cells; Communities; Coupled; Disease; Dissociation; Electron Transport; Equipment; Funding; Generations; Genetic; Goals; Grant; Infection; Institutes; Ions; Laboratories; Ligands; Liquid substance; Malignant Neoplasms; Mass Spectrum Analysis; Methods; Monitor; Parkinson Disease; Pharmaceutical Preparations; Play; Postdoctoral Fellow; Price; Proteins; Proteome; Proteomics; Research; Resources; Role; Sampling; Scanning; Source; Students; System; Techniques; Technology; United States National Institutes of Health; Vascular Diseases; Work; base; insight; instrument; mass spectrometer; nervous system disorder; novel; prevent

DESCRIPTION (provided by applicant): We request funding for a new Orbitrap Velos ETD (Thermo) and plan to integrate this in the Proteome Exploration Laboratory (PEL) of the Beckman Institute at the California Institute of Technology (Caltech). The PEL was established in 2007 and is the only resource center at Caltech where mass spectrometry-based proteome analyses can be performed. The PEL collaborates with students and postdoctoral fellows of the Caltech community to enable their proteomics-related research. The main long-term objective of the PEL is to enable the in-depth elucidation and quantification of proteomes and subproteomes to gain fundamental insights into biological regulatory mechanisms. A common experimental paradigm is to monitor global protein changes that occur after either treating cells with drugs or natural ligands or subjecting them to an environmental or genetic perturbation. Novel methods are constantly being developed to achieve this goal. We request funding for two main reasons. First, demand in the Caltech community has overwhelmed our current suite of instruments. Second and more importantly, technological limitations of our current instruments are hampering the progress of NIH-funded projects in the laboratories of our collaborators. The Orbitrap Velos ETD has the ability to transmit ions with higher efficiency and scan faster than the first generation instruments, thus increasing overall sensitivity. In addition, higher energy C-trap dissociation (HCD) and electron transfer dissociation (ETD) offer complementary fragmentation techniques not available to us, but essential for the progress of the proposed projects. Moreover, the Proxeon Easy nanoHPLC with nanoESI source that we acquired in anticipation of purchasing an Orbitrap Velos allows for rapid switching between 1D and 2D LC separations, which is critical given the great range in complexity of samples that are analyzed at the PEL. To demonstrate our commitment to this application, the PEL has already purchased essential auxiliary equipment for the Orbitrap Velos and will use money obtained from private sources to cover the difference between the maximum allowable funding under this grant mechanism and the purchase price of the Orbitrap Velos. An Orbitrap Velos mass spectrometer coupled with the Proxeon LC system and source, working in concert with our existing bioinformatics pipeline, will play a vital role in advancing projects that span a broad range of fundamental and applied studies that include cancer, neurological disorders (such as Alzheimer's disease, Parkinson), autoimmune diseases, vascular diseases and infections. Fundamental insights in any of these areas will help to prevent and/or cure diseases that have previously been considered incurable.

描述（由申请人提供）：我们申请资助一个新的Orbitrap Velos ETD (Thermo)，并计划将其整合到加州理工学院贝克曼研究所的蛋白质组探索实验室（PEL）。PEL成立于2007年，是加州理工学院唯一可以进行基于质谱的蛋白质组分析的资源中心。PEL与加州理工学院社区的学生和博士后合作，使他们的蛋白质组学相关研究成为可能。PEL的主要长期目标是使蛋白质组和亚蛋白质组的深入阐明和定量，以获得对生物调控机制的基本见解。一种常见的实验范式是监测在用药物或天然配体处理细胞或使其受到环境或遗传扰动后发生的整体蛋白质变化。为了实现这一目标，人们不断开发新的方法。我们请求资助有两个主要原因。首先，加州理工学院社区的需求已经超过了我们现有的整套仪器。第二，也是更重要的一点，我们现有仪器的技术限制阻碍了我们合作者实验室中nih资助项目的进展。Orbitrap Velos ETD能够以更高的效率传输离子，比第一代仪器扫描速度更快，从而提高了整体灵敏度。此外，高能c阱离解（HCD）和电子转移离解（ETD）提供了我们无法获得的互补碎片化技术，但对拟议项目的进展至关重要。此外，我们在购买Orbitrap Velos之前获得的带有nanoESI源的Proxeon Easy纳米高效液相色谱仪允许在1D和2D LC分离之间快速切换，这对于PEL分析的样品的复杂性范围很大至关重要。为了证明我们对这一应用的承诺，PEL已经为Orbitrap Velos购买了必要的辅助设备，并将使用从私人渠道获得的资金来弥补该资助机制下最高允许资金与Orbitrap Velos购买价格之间的差额。Orbitrap Velos质谱仪与Proxeon LC系统和源相结合，与我们现有的生物信息学管道协同工作，将在推进广泛的基础和应用研究项目中发挥重要作用，包括癌症，神经系统疾病（如阿尔茨海默病，帕金森病），自身免疫性疾病，血管疾病和感染。这些领域的基本见解将有助于预防和/或治疗以前被认为无法治愈的疾病。

项目成果

O-linked glycosylation sites profiling in Mycobacterium tuberculosis culture filtrate proteins.

• DOI: 10.1016/j.jprot.2013.05.011
• 发表时间: 2014-01-31
• 期刊: Journal of proteomics
• 影响因子: 3.3
• 作者: Smith GT;Sweredoski MJ;Hess S
• 通讯作者: Hess S

ETD Outperforms CID and HCD in the Analysis of the Ubiquitylated Proteome.

• DOI: 10.1007/s13361-015-1168-0
• 发表时间: 2015-09
• 期刊: Journal of the American Society for Mass Spectrometry
• 影响因子: 3.2
• 作者: Porras-Yakushi TR;Sweredoski MJ;Hess S
• 通讯作者: Hess S

Vectored antibody gene delivery mediates long-term contraception.

载体抗体基因递送介导长期避孕。

• DOI: 10.1016/j.cub.2015.08.002
• 发表时间: 2015
• 期刊: Current biology : CB
• 作者: Li,Juan;Olvera,AlejandraI;Akbari,OmarS;Moradian,Annie;Sweredoski,MichaelJ;Hess,Sonja;Hay,BruceA
• 通讯作者: Hay,BruceA

Evaluation and optimization of mass spectrometric settings during data-dependent acquisition mode: focus on LTQ-Orbitrap mass analyzers.

• DOI: 10.1021/pr3011588
• 发表时间: 2013-07-05
• 期刊: Journal of proteome research
• 影响因子: 4.4
• 作者: Kalli A;Smith GT;Sweredoski MJ;Hess S
• 通讯作者: Hess S