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NHGRI EpiGenVar Coordinating Center

NHGRI EpiGenVar 协调中心

基本信息

批准号：
8509323
负责人：
TARA C. MATISE
金额：
$ 14.56万
依托单位：
RUTGERS, THE STATE UNIV OF N.J.
依托单位国家：
美国
项目类别：
财政年份：
2008
资助国家：
美国
起止时间：
2008-07-08 至 2014-05-31
项目状态：
已结题

来源：
https://reporter.nih.gov/project-details/8509323
关键词：
Aliquot Architecture Biological Assay Cataloging Catalogs Collaborations Communication Communities Complex Computational algorithm Computer software Computers Consultations Data Data Set Data Sources Data Storage and Retrieval Databases Deposition Development Directories Disease Dissection Documentation Eligibility Determination Epidemiologist Epidemiology Funding Future Gene Expression Genetic Genome Genomics Genotype Goals Group Meetings Human Imagery Information Dissemination Information Sciences Informed Consent Institution Intervention Investigation Leadership Link Logistics Methodology Methods Metric Mining Molecular Genetics Monitor National Human Genome Research Institute Other Genetics Participant Performance Phenotype Population Population Study Prevalence Problem Solving Procedures Productivity Publications Published Directory Reporting Research Research Personnel Resources Risk Sampling Scientist Site Source System Time Translational Research United States National Institutes of Health Universities Variant Voice Work base computer science data integration data management data sharing database of Genotypes and Phenotypes design disease phenotype established cell line experience flexibility gene function genetic variant genome wide association study graphical user interface human disease innovation meetings population based programs symposium tool trait user-friendly virtual web services web site wiki working group

项目摘要

DESCRIPTION (provided by applicant): NHGRI is developing a research program to identify and characterize genetic variants causally associated with complex human diseases in genome-wide association (GWA) and other genetic studies. To support the complexities of such an ambitious effort, the Department of Genetics at Rutgers University has convened a strong team of statistical geneticists, molecular genetics, genetic epidemiologists, computer and information scientists, biostatisticians and project management staff with many years of related experience to serve as a Coordinating Center (CC). Specifically, the CC will serve as a centralized genetic epidemiologic resource to facilitate and support the activities of the program and Study Investigators focused on replication and characterization of causal variants by: (1) utilizing innovative computer and information science methodologies to retrieve and synthesize in a comprehensible form study results and descriptive data obtained from the analysis of association, phenotypic, covariate/exposure and population ancestry data, including the impact of particular interventions on a given genotype-phenotype association and the risk of a specific trait associated with a given variant; (2) serving as a data clearinghouse for disseminating results and descriptive data on the epidemiologic architecture of putative disease-associated genetic variants, including detailed and standardized characterizations of the participating population studies, in user-friendly and readily interpretable formats that will maximize the utilization of data population impact and potential gene function by the scientific community; (3) utilizing state-of-the-art computer and information science support to develop cyber platforms that will enable, stimulate and facilitate collaborations with outside investigators for future functional and translational research; and (4) serving as a centralized to facilitate, support and manage as needed program activities and logistics as requested by the Steering Committee or Project Office as needed for successful coordination of the program. Coordination of the program will be done in a spirit of collaboration using creative and flexible approaches, while providing leadership in statistical genetic methodologies for GWAs and approaches to project management. The ultimate goal of our CC will be to facilitate the identification and characterization of genotype-phenotype associations, thereby accelerating our understanding of the genetic and environmental causes of common diseases.

描述（由申请人提供）：NHGRI正在开发一项研究计划，以识别和表征与全基因组关联（GWA）和其他遗传研究中的复杂人类疾病因果相关的遗传变异。为了支持这种雄心勃勃的努力的复杂性，罗格斯大学遗传学系召集了一个强大的统计遗传学家，分子遗传学家，遗传流行病学家，计算机和信息科学家，生物统计学家和具有多年相关经验的项目管理人员团队作为协调中心（CC）。具体而言，CC将作为集中的遗传流行病学资源，通过以下方式促进和支持项目和研究者的活动，重点是因果变异的复制和表征：（1）利用创新的计算机和信息科学方法，以可理解的形式检索和综合研究结果和描述性数据，协变量/暴露和人群血统数据，包括特定干预措施对给定基因型-表型关联的影响以及与给定变体相关的特定特征的风险;（2）作为一个数据交换中心，用于传播关于推定的疾病相关遗传变异的流行病学结构的结果和描述性数据，包括以方便用户和易于解释的格式对参与的人口研究进行详细和标准化的描述，以便科学界最大限度地利用数据对人口的影响和潜在的基因功能;（3）利用最先进的电脑及资讯科技支援，发展电脑平台，激励和促进与外部研究人员的合作，以促进未来的功能和转化研究;（4）作为一个集中的，以促进，支持和管理所需的计划活动和后勤，根据指导委员会或项目办公室的要求，根据需要成功协调计划。该计划的协调将在合作的精神下使用创造性和灵活的方法进行，同时在GWA的统计遗传方法和项目管理方法方面提供领导。我们CC的最终目标是促进基因型-表型关联的识别和表征，从而加速我们对常见疾病的遗传和环境原因的理解。