Multi-Cohort, Network-Guided Regression for GE/GG Interactions in Disease Traits

疾病特征中 GE/GG 相互作用的多队列、网络引导回归

• 批准号: 8218633
• 负责人: Josee Dupuis
• 金额: $ 20.44万
• 依托单位: BOSTON UNIVERSITY (CHARLES RIVER CAMPUS)
• 依托单位国家: 美国
• 财政年份: 2012
• 资助国家: 美国
• 起止时间: 2012-04-05 至 2014-03-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8218633
• 关键词: Aging; Alzheimer' s Disease; Area; Autistic Disorder; Biological; Biological databases; Cardiovascular Diseases; Cardiovascular system; Cohort Studies; Complex; Computer software; DNA Sequence; Data; Data Analyses; Detection; Development; Diabetes Mellitus; Disease; Emotional; Environment; Epidemiology; Etiology; Evaluation; Family; Financial cost; Framingham Heart Study; Genes; Genetic; Genomics; Glucose; Goals; Heart; Human; Human Genome; Individual; Insulin; Life Style; Lung; Malignant Neoplasms; Measures; Medicine; Meta-Analysis; Metabolic; Methodology; Methods; Modeling; Nature; Neurologic; Obesity; Parkinson Disease; Pathway interactions; Phenotype; Population; Process; Research; Research Infrastructure; Scientist; Smoking; Societies; Staging; Statistical Data Interpretation; Technology; Translating; Work; base; biological systems; cohort; gene discovery; gene interaction; human disease; hypertensive heart disease; improved; insight; loved ones; network models; novel; pulmonary function; simulation; tool; trait; treatment strategy

DESCRIPTION (provided by applicant): Complex diseases are believed to be caused by a number of factors of both genetic and environmental nature, as well as lifestyle. Examples include cardiovascular (e.g., heart disease, hypertension), metabolic (e.g., diabetes), and neurological (e.g., Alzheimer's, Parkinson's, and autism) diseases, and cancer. The financial costs of these diseases on families and society are staggering, while their physical and emotional toll on individuals and their loved ones is incalculable. While early on it was expected that decoding the human genome would be an immediate precursor to gaining significant insight into the causes of complex diseases, it is clear now that progress in this area must come from unraveling the interplay of genes with environment, as well as with each other, through the system of biological pathways and related networks. Our goal in this proposal is the development of a novel network-guided statistical methodology to facilitate the discovery of gene-environment (GxE) and gene-gene (GxG) interactions associated with complex quantitative traits associated with human disease. Specifically, we will (1) develop a class of sparse, network-guided regression models for detection of GxE and GxG interactions, (2) extend the applicability of this regression framework to multiple cohorts through the development of a two-stage meta-analysis strategy, and (3) assess the overall methodology both in simulation and using data from two specific disease areas: diabetes-related quantitative traits and pulmonary quantitative traits and diseases. The data analyses will be done in conjunction with colleagues at the Framingham Heart Study and two consortia: MAGIC and CHARGE. Successful completion of the proposed research will yield a highly novel and coherent set of tools (including software implementation) for a principled and biologically- informed two-stage approach to detecting GxE and GxG interactions associated with human disease in current large-scale, multi-cohort association analyses. Ultimately, our work should help to significantly accelerate the development of targeted therapies and personalized medicine strategies, through its fundamental impact on the early stages of the overall process. PUBLIC HEALTH RELEVANCE: Our work will advance significantly the ability of scientists to unravel the interplay of genes with environment, as well as with each other, as they relate to complex human diseases, such as cardiovascular disease, diabetes, Alzheimer's disease, and cancer. Ultimately, our work should help to significantly accelerate the development of targeted therapies and personalized medicine strategies, through its fundamental impact on the early stages of the overall process.

描述（由申请人提供）：复杂疾病被认为是由遗传和环境因素以及生活方式的多种因素引起的。例子包括心血管疾病（例如心脏病、高血压）、代谢疾病（例如糖尿病）和神经系统疾病（例如阿尔茨海默病、帕金森病和自闭症）以及癌症。这些疾病给家庭和社会造成的经济损失是惊人的，而对个人及其亲人的身体和情感造成的损失也是无法估量的。虽然早期人们预计解码人类基因组将是深入了解复杂疾病原因的直接先导，但现在很明显，这一领域的进展必须来自通过生物途径和相关网络系统阐明基因与环境以及基因与基因之间的相互作用。我们在该提案中的目标是开发一种新颖的网络引导统计方法，以促进发现与人类疾病相关的复杂数量性状相关的基因-环境（GxE）和基因-基因（GxG）相互作用。具体来说，我们将（1）开发一类稀疏、网络引导的回归模型，用于检测 GxE 和 GxG 相互作用，（2）通过开发两阶段荟萃分析策略，将该回归框架的适用性扩展到多个队列，以及（3）评估模拟和使用来自两个特定疾病领域的数据的总体方法：糖尿病相关的数量性状和肺部数量性状以及 疾病。数据分析将与弗雷明汉心脏研究的同事以及两个联盟：MAGIC 和 CHARGE 一起完成。成功完成拟议的研究将产生一套高度新颖且连贯的工具（包括软件实现），用于在当前大规模、多队列关联分析中检测与人类疾病相关的 GxE 和 GxG 相互作用的原则性和生物学信息两阶段方法。最终，我们的工作应该通过其对整个过程的早期阶段的根本影响，帮助显着加速靶向治疗和个性化医疗策略的开发。 公共健康相关性：我们的工作将显着提高科学家揭示基因与环境以及基因之间相互作用的能力，因为它们与复杂的人类疾病有关，例如心血管疾病、糖尿病、阿尔茨海默病和癌症。最终，我们的工作应该通过其对整个过程的早期阶段的根本影响，帮助显着加速靶向治疗和个性化医疗策略的开发。