Structure and function of the bacterial primosome

细菌引发体的结构和功能

• 批准号: 8373035
• 负责人: James L Keck
• 金额: $ 29.94万
• 依托单位: UNIVERSITY OF MASSACHUSETTS AMHERST
• 依托单位国家: 美国
• 财政年份: 2012
• 资助国家: 美国
• 起止时间: 2012-09-30 至 2016-08-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8373035
• 关键词: Bacteria; Binding; Biochemical; Biochemical Genetics; Biological; Cell physiology; Cells; Chromosome Mapping; Complex; DNA; DNA Polymerase I; DNA Structure; DNA biosynthesis; DNA replication fork; Data; Disease; DnaB helicase; Ensure; Genetic; Genome; Genomics; Goals; Hand; Health; Human; In Vitro; Individual; Knowledge; Length; Life; Link; Longevity; Maintenance; Malignant - descriptor; Maps; Measures; Mediating; Metabolic; Molecular; Molecular Models; Organism; Pathway interactions; Plague; Process; Protein Binding; Proteins; Publishing; Reaction; Regulation; Replication Initiation; Research; Resolution; Roentgen Rays; SS DNA BP; Site; Solutions; Structure; Surface; System; Testing; Translating; Variant; X-Ray Crystallography; base; emergency service responder; in vivo; killings; molecular modeling; physical model; prevent; programs; protein complex; protein function; recombinase; recombinational repair; repaired; research study; tumor

DESCRIPTION (provided by applicant): The DNA replication restart pathways reload the DNA replication machinery onto replication forks that have been abandoned as a consequence of genomic damage. These pathways form an essential biochemical link between repair (often recombinational repair) of broken replication forks and DNA replication. The proteins that drive these reactions, referred to as the primosome or the Replication Restart Proteins (RRPs), must recognize the structures of these abandoned replication forks and reload the DNA replication machinery at these sites. This process is heavily regulated to ensure loading fidelity and to avoid over-replication that could arise from initiating replication at improper DNA structures. The structural mechanisms underlying DNA replication restart and the cellular mechanisms by which it is integrated with other cellular genome maintenance processes are currently poorly understood. Our proposal combines structural, biochemical, and genetic approaches to define the mechanisms of DNA replication restart pathways in complementary ways. We wil use X- ray crystallography to determine the crystal structures of key proteins and protein complexes that comprise the primosome (Aim 1). These studies will produce molecular models that will help define the physical mechanisms by which bacterial RRPs function. Additionally, we will define biochemically how RRPs interact with one another to drive replication restart (Aim 2). This set of experiments will link the physical models generated in Aim 1 to steps along the replication restart pathways, to reveal how the primosome ties replication fork recognition to RRP complex assembly. Finally, we will identify linkages that coordinate replication restart with DNA replication, recombination, and repair processes in bacterial cells (Aim 3). These connections will help define how replication restart is integrated into the basal genome maintenance network in cells and how its use is regulated to prevent unwarranted replication initiation. PUBLIC HEALTH RELEVANCE: DNA replication restart is an important process to study from a human health perspective because knowing more about DNA replication will help to identify targets to kill selectively the deleterious, malignant or disease causing cells that may plague our bodies (e.g., tumors or pathogenic organisms). Conversely, this knowledge may also be used to augment the basic health and longevity of our cells. This may be translated into a longer, healthier life for the individual.

描述（由申请人提供）：DNA复制重启途径将DNA复制机制重新加载到由于基因组损伤而被放弃的复制叉上。这些途径在断裂复制叉的修复（通常是重组修复）和DNA复制之间形成了一个重要的生物化学联系。驱动这些反应的蛋白质，称为primosome或复制重启蛋白（RRPs），必须识别这些废弃的复制叉的结构，并在这些位点重新加载DNA复制机制。该过程受到严格调控，以确保加载保真度并避免可能由在不正确的DNA结构处启动复制引起的过度复制。的 DNA复制重新启动的结构机制和它与其它细胞基因组维持过程整合的细胞机制目前知之甚少。我们的建议结合结构，生物化学和遗传学的方法来定义DNA复制重新启动途径的机制，在互补的方式。我们将使用X射线晶体学来确定构成原小体的关键蛋白质和蛋白质复合物的晶体结构（目的1）。这些研究将产生分子模型，有助于确定细菌RRPs发挥作用的物理机制。此外，我们将以生物化学的方式定义RRP如何相互作用以驱动复制重新启动（目标2）。这组实验将把目标1中生成的物理模型与复制重新启动途径的沿着步骤联系起来，以揭示原始体如何将复制叉识别与RRP复合体组装联系起来。最后，我们将确定协调复制重新启动与DNA复制，重组和修复过程中的细菌细胞（目标3）。这些连接将有助于定义复制重启如何整合到细胞中的基础基因组维护网络中，以及如何调节其使用以防止不必要的复制启动。 公共卫生关系：从人类健康的角度来看，DNA复制重启是一个重要的研究过程，因为更多地了解DNA复制将有助于确定目标，以选择性地杀死可能困扰我们的有害，恶性或致病细胞。 主体（例如，肿瘤或致病生物体）。相反，这些知识也可以用来增强我们细胞的基本健康和寿命。这可能会转化为一个更长，更健康的生活为个人。