POLY(A)-BINDING PROTEIN-RNA COMPLEX

多聚 (A) 结合蛋白-RNA 复合物

• 批准号: 8361110
• 负责人: Richard E Lloyd
• 金额: $ 1.96万
• 依托单位: BAYLOR COLLEGE OF MEDICINE
• 依托单位国家: 美国
• 财政年份: 2011
• 资助国家: 美国
• 起止时间: 2011-01-01 至 2011-12-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8361110
• 关键词: 3' Untranslated Regions; Alanine; Binding; C-terminal; Cleaved cell; Complex; DNA-Directed RNA Polymerase; Electron Microscopy; Funding; Genetic Translation; Goals; Grant; Human poliovirus; Messenger RNA; Molecular; Molecular Conformation; National Center for Research Resources; Nucleotides; Pattern; Peptide Initiation Factors; Polioviruses; Poly(A) Tail; Poly(A)+ RNA; Poly(A)-Binding Proteins; Poly(A)-specific ribonuclease; Polymerase; Principal Investigator; Proline; Protein Binding; RNA; RNA Binding; RNA chemical synthesis; RNA replication; RNA-Binding Proteins; RRM1 gene; Recycling; Research; Research Infrastructure; Resources; Ribosomes; Source; Structure; Translation Initiation; Translations; United States National Institutes of Health; Viral; adenylate; cost; eIF-4B; genetic regulatory protein; mRNA Decay; macromolecule; molecular marker; nuclease; release factor 3; tool; viral RNA

This subproject is one of many research subprojects utilizing the resources provided by a Center grant funded by NIH/NCRR. Primary support for the subproject and the subproject's principal investigator may have been provided by other sources, including other NIH sources. The Total Cost listed for the subproject likely represents the estimated amount of Center infrastructure utilized by the subproject, not direct funding provided by the NCRR grant to the subproject or subproject staff. Poly(A)-binding protein (PABP) is a critical regulatory protein that simultaneously controls mRNA translation and decay. PABP binds poly(A) RNA and organizes into undefined oligomerized structures along poly(A) tails that protect mRNA from nucleases in a repeating 27-nt pattern. PABP has four RRM motifs that bind RNA. A structure exists for RRM1-2 complexed with 7 adenylates. The C-terminal domain is enigmatic. It is proline and alanine-rich and nearly half the molecule. There is a small globular domain at the extreme C-terminus whose structure was solved by NMR, and contains a binding cleft for interactions with translation release factor 3(eRF3), and PABP regulatory protein (PAIP2), and poly(A)nuclease (Pan3). Other less defined regions of the C-terminal domain bind 60S ribosomes, initiation factors (eIF4B), translation stimulatory factors (Paip1) and ataxin2. Long term goals are to determine how interactions of PABP with eIF4G and eRF3 regulate de novo translation initiation versus ribosome 3'-5' recycling. Another long term goal is to understand how cleavage of select PABP moieties (directed by alternate conformations), is able to shut off poliovirus mRNA translation and simultaneously activate viral RNA replication on the same template. This is known to involve 5' -3 interactions between viral 3CD (RNA polymerase precursor), PCBP2 (cellular RNA-binding protein) on the viral 5' cloverleaf structure and PABP on the poly(A) tail. Viral RNA synthesis initiation occurs not at the 3' end of the poly(A) tail, but internally, 20 nucleotides from the 3' end of the 3' untranslated region (3). We hypothesize that one PABP is used as a molecular tool for polymerase placement on the template. However, there is no rationale for how one of 3-4 potential PABP moieties along the poly(A) tail is chosen as a molecular marker for directed cleavage and polymerase access to the template

这个子项目是许多利用资源的研究子项目之一 由NIH/NCRR资助的中心拨款提供。子项目的主要支持 子项目的主要研究者可能是由其他来源提供的， 包括其它NIH来源。 列出的子项目总成本可能 代表子项目使用的中心基础设施的估计数量， 而不是由NCRR赠款提供给子项目或子项目工作人员的直接资金。 多聚腺苷酸结合蛋白（Poly（A）-binding protein，PABP）是一种重要的调节蛋白，它同时控制mRNA的翻译和降解. PABP结合poly（A）RNA，并沿沿着poly（A）尾组织成未定义的寡聚化结构，该寡聚化结构以重复的27-nt模式保护mRNA免受核酸酶的侵害。PABP具有四个结合RNA的RRM基序。存在与7个腺苷酸复合的RRM 1 -2的结构。C-末端结构域是神秘的。它富含脯氨酸和丙氨酸，几乎占分子的一半。在C末端有一个小的球状结构域，其结构通过NMR解析，并且包含用于与翻译释放因子3（eRF 3）、PABP调节蛋白（PAIP 2）和多聚（A）核酸酶（Pan 3）相互作用的结合裂缝。C-末端结构域的其他不太明确的区域结合60 S核糖体、起始因子（eIF 4 B）、翻译刺激因子（Paip 1）和共济失调蛋白2。 长期目标是确定PABP与eIF 4G和eRF 3的相互作用如何调节从头翻译起始相对于核糖体3 '-5'再循环。另一个长期目标是了解选择的PABP部分的切割（由替代构象指导）如何能够关闭脊髓灰质炎病毒mRNA翻译并同时激活相同模板上的病毒RNA复制。已知这涉及病毒3CD（RNA聚合酶前体）、病毒5'三叶草结构上的PCBP 2（细胞RNA结合蛋白）和poly（A）尾上的PABP之间的5' -3相互作用。病毒RNA合成起始不是发生在poly（A）尾的3'端，而是发生在3'非翻译区的3'端的内部20个核苷酸处（3）。我们假设一个PABP被用作聚合酶放置在模板上的分子工具。然而，对于如何选择沿着poly（A）尾的3-4个潜在PABP部分之一作为定向切割和聚合酶接近模板的分子标记物，没有基本原理