Point Impact and Sparsity in Functional Data Analysis.
Point Impact and Sparsity in Functional Data Analysis.
批准号:
8324206
负责人:
IAN WRAY MCKEAGUE
金额:
$18.06万
依托单位国家:
美国
项目类别:
财政年份:
2011
资助国家:
美国
项目状态:
已结题
起止时间:
2011-09-01 至 2015-06-30
关键词:
AccountingAddressAdultAffectBase PairingBehaviorCancer PatientCharacteristicsChromosomesClinicalCollaborationsCollectionComplexDNA MethylationDataData AnalysesData SetDevelopmentDiagnosisDisease OutcomeDoctor of PhilosophyEpidemiologyEquationFaminesFractalsGene ExpressionGene Expression ProfileGenesGeneticGenomicsGoalsGrowthIntakeJointsLearningLife Cycle StagesLinear RegressionsLiteratureMachine LearningMammary NeoplasmsMeasurementMethodologyMethodsModelingMolecular ProfilingOutcomePerinatalPositioning AttributeProceduresPrognostic MarkerPropertyPublic HealthPublic Health Applications ResearchResolutionStagingStatistical MethodsStudentsSystemTestingTimeWorkbasecardiovascular risk factordata modelingepidemiology studyestrophilinflexibilitygenome-wideimprovedindexinginsightinterestmalignant breast neoplasmneuropsychologicalnovelresponsetheoriestumor
中文摘要
描述(由申请人提供):这是一个开发功能数据分析新方法的项目,目的是在基因组学和生命过程流行病学中实现重要的公共卫生应用。在全基因组表达和DNA甲基化研究中,感兴趣的是定位显示与临床结果相关的活性的基因,例如,使用乳腺癌患者肿瘤的基因表达谱来预测雌激素受体蛋白浓度,这是乳腺肿瘤的一个重要预后标志。在这样的研究中,染色体上的基因表达谱可以被认为是功能性预测因子,并且与临床结果相关的基因通过其沿着染色体的碱基对位置沿着来鉴定。该项目的主要目标是开发新的统计推断方法来寻找此类遗传基因座,从而识别可能对诊断和治疗有用的染色体区域。虽然有大量的基因表达数据的统计学文献,它几乎是专门涉及多个测试程序检测差异表达的基因的存在,和统计方法定位这些基因的基础上表达谱(解释为功能预测)没有得到很好的发展。虽然功能数据分析在过去十年中已经达到了一个成熟的发展阶段,但当当前可用的方法应用于涉及具有点影响效应(如基因表达)的功能预测因子(或轨迹)的情况时,或者在轨迹观察中只有稀疏时间分辨率的情况下,可能会出现严重的问题。该项目的主要目标是利用轨迹中的分形行为来改进函数数据分析中的统计学习方法。该项目将对理解具有分形行为的各种复杂自适应系统具有重要意义。将开发与心血管风险结果相关的卡路里摄入轨迹和DNA甲基化谱以及与神经心理学结果相关的生长率轨迹的研究,作为新方法的应用。要解决的第一个具体问题是表明,在涉及具有分形特征的轨迹的系统中,学习速率由Hurst参数(即,自相似标度的指数),并表明一种自举学习可以适应全范围的分形行为。要解决的第二个具体问题是开发一种用于生成具有分形属性的轨迹的缺失值(例如,增长率曲线),并找到一种方法来进行功能回归建模的基础上插补的轨迹。1
英文摘要
DESCRIPTION (provided by applicant): This is a project to develop new methods of functional data analysis directed towards important public health applications in genomics and life course epidemiology. In genome-wide expression and DNA methylation studies, it is of interest to locate genes showing activity that is associated with clinical outcomes, e.g., to use gene expression profiles from the tumors of breast cancer patients to predict estrogen receptor protein concentration, an important prognostic marker for breast tumors. In such studies, the gene expression profile across a chromosome can be regarded a functional predictor, and a gene associated with the clinical outcome is identified by its base pair position along the chromosome. The key aim of the project is to develop new methods of statisti- cal inference for finding such genetic loci, leading to the identification of chromosomal regions that are potentially useful for diagnosis and therapy. Although there is extensive statistical literature on gene expression data, it is almost exclusively concerned with multiple testing procedures for detecting the presence of differentially expressed genes, and statistical methods for locating such genes based on expression profiles (interpreted as functional predictors) are not well developed. Although functional data analysis has reached a mature stage of development over the last ten years, serious problems can arise when the currently available methods are applied in situations involving functional predictors (or trajectories) that have point impact effects (as with gene expression), or in situations in which there is only sparse temporal resolution in the observation of the trajectories. The broad objectives of the project are to exploit fractal behavior in the trajectories to improve statistical learning methodology in functional data analysis. The project will have important implications for understanding a wide variety of complex adaptive systems having fractal behavior. Studies of calorie-intake trajectories and DNA methylation profiles related to cardiovascular risk outcomes, and growth rate trajectories related to neuropsychological outcomes, will be developed as applications of the new methodology. The first specific problem to be addressed is to show that the rates of learning in systems involving trajectories with fractal characteristics are determined by the Hurst parameter (i.e., the exponent of self-similarity scaling) and to show that a type of bootstrap learning can adapt to the full range of fractal behavior. The second specific problem to be addressed is to develop an imputation method for generating missing values of trajectories that have fractal properties (e.g., growth rate curves), and to find a way to carry out functional regression modeling based on the imputed trajectories. 1
期刊论文(0)
专著(0)
科研奖励(0)
会议论文
Inferential methods for functional data from wearable devices
-
批准号:9924432
-
项目类别:
-
资助金额:$29.89万
-
财政年份:2019
-
负责人:IAN WRAY MCKEAGUE
-
依托单位:
Inferential methods for functional data from wearable devices
-
批准号:10605202
-
项目类别:
-
资助金额:$29.89万
-
财政年份:2019
-
负责人:IAN WRAY MCKEAGUE
-
依托单位:
Inferential methods for functional data from wearable devices
-
批准号:10394221
-
项目类别:
-
资助金额:$29.89万
-
财政年份:2019
-
负责人:IAN WRAY MCKEAGUE
-
依托单位:
Post-selection inference and trajectory analysis
-
批准号:9029730
-
项目类别:
-
资助金额:$19.7万
-
财政年份:2011
-
负责人:IAN WRAY MCKEAGUE
-
依托单位:
Point Impact and Sparsity in Functional Data Analysis.
-
批准号:8023927
-
项目类别:
-
资助金额:$18.06万
-
财政年份:2011
-
负责人:IAN WRAY MCKEAGUE
-
依托单位:
Point Impact and Sparsity in Functional Data Analysis.
-
批准号:8669009
-
项目类别:
-
资助金额:$18.06万
-
财政年份:2011
-
负责人:IAN WRAY MCKEAGUE
-
依托单位:
Point Impact and Sparsity in Functional Data Analysis.
-
批准号:8505504
-
项目类别:
-
资助金额:$17.43万
-
财政年份:2011
-
负责人:IAN WRAY MCKEAGUE
-
依托单位:
Post-selection inference and trajectory analysis
-
批准号:9316655
-
项目类别:
-
资助金额:$20.0万
-
财政年份:2011
-
负责人:IAN WRAY MCKEAGUE
-
依托单位:
海外基金