Activities of nucleoprotein complexes visualized in single-molecule experiments

单分子实验中核蛋白复合物的活性可视化

• 批准号: 8481118
• 负责人: JOHN F MARKO
• 金额: $ 25.99万
• 依托单位: NORTHWESTERN UNIVERSITY
• 依托单位国家: 美国
• 财政年份: 2013
• 资助国家: 美国
• 起止时间: 2013-09-30 至 2017-05-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8481118
• 关键词: Affect; Bacteria; Bacteriophages; Binding; CSPG6 gene; Cells; Chromatin; Chromatin Fiber; Chromosomes; Complex; DNA; DNA Folding; DNA-Binding Proteins; DNA-Protein Interaction; Dependence; Detection; Dissociation; Employee Strikes; Eukaryota; Excision; Family; Fluorescence; Gene Expression Regulation; Genetic Processes; Genetic Recombination; Genetic Variation; Genome; HMGB1 gene; Health; Hereditary Disease; Horizontal Gene Transfer; Human; Imagery; In Vitro; Integrase; Kinetics; Lead; Length; Life; Magnetism; Maintenance; Mediating; Multienzyme Complexes; Mutation; Nature; Nucleoproteins; Organism; Paste substance; Pathology; Phase; Phosphorylation; Process; Prokaryotic Cells; Protein Binding; Proteins; Reaction; Regulator Genes; Resolvase; Rotation; Serine; Site; Sodium Chloride; Solutions; Spatial Distribution; Structural Protein; Synapses; System; Techniques; Testing; Time; Yeasts; cohesin; condensin; fighting; protein complex; protein degradation; protein function; public health relevance; recombinase; reconstitution; research study; single molecule; single-molecule FRET

DESCRIPTION (provided by applicant): Mechanistic understanding of living things requires our understanding of how proteins and DNA interact together to generate functional chromosomes. This understanding is central to preserving human health, dealing with genetic disorders, and fighting pathogenic organisms. The proposed projects are focused on single-molecule analyses which permit direct visualization of biomolecule interactions, and can be used to analyze protein-DNA interactions in detail. The aims of the proposal include careful study of an "exchange" mechanism for removal of proteins from DNA that suggests a major revision of conventional descriptions of protein turnover on DNA, and which will affect a wide range of studies of gene regulatory and chromosome-structural proteins. A second aim is focused on direct study of mechanisms of large "Structural Maintenance of chromosomes" protein complexes which mediate the folding of chromosomes in eukaryote cells. Finally, a third aim is focused on mechanisms underlying a family of "cut and paste" DNA recombination systems responsible in part for generating bacteria genetic diversity. The highly mechanistic analyses of DNA-processing machinery that are proposed will give us a stronger understanding of how cells interpret, fold and change their genomes, leading to a better understanding of pathologies where those functions are impaired, and better understanding of how to target those functions in pathogenic organisms.

描述（由申请人提供）：对生物的机械理解需要我们理解蛋白质和DNA如何相互作用以产生功能性染色体。这种理解对于保护人类健康、处理遗传疾病和对抗病原体至关重要。 拟议的项目集中在单分子分析，允许直接可视化的生物分子相互作用，并可用于详细分析蛋白质-DNA相互作用。 该提案的目的包括仔细研究从DNA中去除蛋白质的“交换”机制，这表明对DNA上蛋白质周转的传统描述进行了重大修订，并将影响对基因调控和染色体结构蛋白的广泛研究。 第二个目标是集中在直接研究机制的大型“结构维护的 在真核生物细胞中，染色体的蛋白质复合物介导染色体的折叠。 最后，第三个目标是集中在一个家庭的“剪切和粘贴”DNA重组系统的机制，部分负责产生细菌的遗传多样性。提出的DNA加工机制的高度机械分析将使我们更好地了解细胞如何解释，折叠和改变其基因组，从而更好地了解这些功能受损的病理学，并更好地了解如何在病原体中靶向这些功能。