IDENTIFICATION OF VUR GENES BY COMBINED LINKAGE ANALYSIS AND EXOME SEQUENCING

结合连锁分析和外显子组测序鉴定 VUR 基因

• 批准号: 8507844
• 负责人: Rasheed Adebayo Gbadegesin
• 金额: $ 19.34万
• 依托单位: DUKE UNIVERSITY
• 依托单位国家: 美国
• 财政年份: 2013
• 资助国家: 美国
• 起止时间: 2013-09-19 至 2015-05-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8507844
• 关键词: Affect; Back; C-terminal; Child; Childhood; Chromosomes; Cicatrix; Clinical Research; Cohort Studies; Complex; Data; Defect; Development; Diagnosis; Diagnostic; Diagnostic Procedure; Dialysis procedure; Disease; Dominant Genes; EGF gene; End stage renal failure; Etiology; Event; Evolution; Exclusion; Exons; Extracellular Matrix Proteins; Family; Family member; Fibrinogen; Fibronectins; Frequencies; Future; Gene Mutation; Generations; Genes; Genetic; Genetic Heterogeneity; Genetic Recombination; Genetic Screening; Genitourinary system; Genotype; Goals; Health; Human; Individual; Investigation; Joint Laxity; Joints; Kidney; Kidney Diseases; Kidney Transplantation; Mesenchyme; Metanephric Diverticulum; Mutate; Mutation; Mutation Analysis; Outcome; Pathogenesis; Pathway interactions; Patients; Phenotype; Proteins; Public Health; Pyelonephritis; Reflux; Reporting; Research; Resources; Risk Factors; Role; Single-Gene Defect; Tenascin; Testing; Urinary tract; age group; base; cohort; exome; exome sequencing; genetic linkage analysis; genetic pedigree; genome-wide; genome-wide linkage; improved; insight; janusin; kindred; malformation; member; nephrogenesis; novel; public health relevance; segregation; tool; translational study

DESCRIPTION (provided by applicant): Primary vesicoureteric reflux (PVUR), or non-syndromic VUR, is the most common type of congenital anomaly of the kidney and the urinary tract (CAKUT). PVUR is the single most important risk factor for pyelonephritis and renal parenchymal scarring in the pediatric age group. Renal parenchymal scarring due to PVUR is referred to as reflux nephropathy and is a major cause of end stage kidney disease requiring dialysis and kidney transplantation in children. PVUR shows familial aggregation; however, the specific genetic cause(s) of PVUR is unknown despite a number of linkage studies. Reasons for this include: variable expression of the disease, difficulty with case ascertainment, genetic heterogeneity and lack of large pedigrees that can facilitate locus identification. We have ascertained a large 97 member PVUR kindred spanning five generations. We performed a genome-wide linkage study (GWLS) on this family and obtained a significant genome-wide LOD score of 3.3 on chromosome 6p. We performed exome sequencing on affected individuals in the family and identified mutations in tenascin XB (TNXB) as a cause of familial VUR. The proposed studies have the following specific objectives: a) to define the role of tenascin genes in the etiology of PVUR and b) to identify new PVUR causative genes. Our specific aims are (1) To perform mutation analysis in TNXB and other tenascins in a cohort of 200 individuals with familial and sporadic PVUR and define genotype/phenotype correlations. (2) To perform sequential genome wide linkage studies (GWLS) and whole exome/targeted sequencing in families with PVUR. Impact on public health: Identification of PVUR genes may provide a novel non-invasive diagnostic tool for a subset of children with PVUR. Furthermore, this research will provide insights into the pathogenesis of PVUR and further elucidate the pathways involved in the development of the kidney and genitourinary tract. Future studies will define the role of the genes in the etiology of other malformations of the kidney and urinary tract and also seek to unravel the mechanisms by which the identified gene causes PVUR and other malformations of the kidney and the urinary tract.

描述（由申请人提供）：原发性膀胱输尿管反流（PVUR）或非综合征性VUR是最常见的先天性肾脏和尿路异常（CAKUT）类型。PVUR是儿科年龄组肾盂肾炎和肾实质瘢痕形成的单一最重要风险因素。PVUR引起的肾实质瘢痕形成被称为反流性肾病，是儿童需要透析和肾移植的终末期肾病的主要原因。PVUR显示家族聚集性;然而，尽管进行了许多连锁研究，但PVUR的具体遗传原因尚不清楚。其原因包括：疾病的可变表达，病例确定的困难，遗传异质性和缺乏可以促进基因座鉴定的大谱系。我们已经确定了一个大型97成员PVUR亲属跨越五代。我们对该家系进行了全基因组连锁研究（GWLS），在染色体6p上获得了3.3的显著全基因组LOD评分。我们对家族中受影响的个体进行了外显子组测序，并确定了腱生蛋白XB（TNXB）突变是家族性VUR的原因。所提出的研究具有以下具体目标：a）确定腱生蛋白基因在PVUR病因学中的作用和B）鉴定新的PVUR致病基因。我们的具体目标是：（1）在200例家族性和散发性PVUR患者中进行TNXB和其他腱生蛋白的突变分析，并确定基因型/表型相关性。(2)在PVUR家系中进行全基因组连锁研究（GWLS）和全外显子组/靶向测序。对公共卫生的影响：PVUR基因的鉴定可能为一部分PVUR儿童提供一种新的非侵入性诊断工具。此外，这项研究将为PVUR的发病机制提供见解，并进一步阐明肾脏和泌尿生殖道发育所涉及的途径。未来的研究将确定这些基因在其他肾脏和泌尿道畸形病因学中的作用，并试图阐明所确定的基因导致PVUR和其他肾脏和泌尿道畸形的机制。