Variable-Protein Surface Display in Treponema denticola

齿垢密螺旋体的可变蛋白表面展示

• 批准号: 8227992
• 负责人: JEFFERY F. MILLER
• 金额: $ 18.69万
• 依托单位: UNIVERSITY OF CALIFORNIA LOS ANGELES
• 依托单位国家: 美国
• 财政年份: 2011
• 资助国家: 美国
• 起止时间: 2011-03-01 至 2013-02-28
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8227992
• 关键词: Architecture; Bacteriophages; Bacteroides thetaiotaomicron; Beryllium; Bifidobacterium; Binding; Bordetella; C-Type Lectins; C-terminal; Cell surface; Code; Complex; Development; Disease; Equilibrium; Evolution; Family; Gene Targeting; Genes; Genetic; Genome; Goals; Health; Human; Indium; Legionella pneumophila; Ligand Binding; Ligands; Link; Lipoproteins; Location; Measures; Mediating; Membrane Proteins; Methods; Microbe; Microbial Biofilms; Mutagenesis; N-terminal; Nature; Nucleotides; Oral; Oral Microbiology; Order Spirochaetales; Organism; Pathogenesis; Pathway interactions; Peptide Signal Sequences; Periodontal Diseases; Plasmids; Play; Proteins; Retroelements; Role; Scaffolding Protein; Site; Site-Directed Mutagenesis; Sorting - Cell Movement; Specific qualifier value; Specificity; Surface; System; Testing; Treponema denticola; Tropism; Variant; Virulence; Work; base; fitness; member; microbial; microbial community; novel; oral bacteria; pathogen; polypeptide; prototype; public health relevance; receptor; research study; scaffold; skills

DESCRIPTION (provided by applicant): T. denticola is a frequent component of the complex polymicrobial biofilms that constitute subgingival plaque. It is a "late colonizer" and is proposed to play an etiologic role in the development of periodontal disease. T. denticola ATCC 35405 contains a complete diversity-generating retroelement (DGR) within its 2.8 Mb circular genome. DGRs are a newly discovered family of retroelements that generate diversity in target genes. They function through a template-dependent, reverse trancriptase-mediated mechanism that introduces nucleotide substitutions at specified sites in protein-coding sequences. Variable residues are displayed in the ligand- binding pocket of a specialized C-type lectin scaffold which balances protein diversity with structural stability, creating vast repertoires of receptors for potential ligand-receptor interactions. In addition to a DGR-linked target, the T. denticola genome includes six additional target genes, all of which are predicted to encode surface-exposed lipoproteins. We estimate potential repertoires of 1024 unique polypeptide sequences for each of seven target proteins, far exceeding the estimated capabilities of any naturally occurring protein diversification system described to date. The goal of this R21 is to evaluate the possibility that T. denticola has evolved a DGR-based system to display massively variable protein repertoires on its cell surface. Our specific aims are to: 1) test the hypothesis that the T. denticola DGR is capable of directing site-specific mutagenesis of predicted target genes, and 2) test the hypothesis that diversified target genes encode surface-exposed lipoproteins. DGRs represent a newly discovered mechanism for generating protein diversity and they have the potential to confer powerful selective advantages to their hosts. For T. denticola, we imagine that the accelerated evolution of novel binding interactions could increase the organisms fitness in the highly dynamic microbial community in which it resides. Understanding the DGR system in this species will not only reveal new mechanisms for bacterial evolution, but also provide new paradigms for understanding adaptations that facilitate participation in microbial consortia that play roles in health and disease. PUBLIC HEALTH RELEVANCE: Treponema denticola is a common component of subgingival plaque and is proposed to contribute to the pathogenesis of periodontal disease. Our studies will contribute to an understanding of colonization and virulence mechanisms by this oral bacterium.

描述（由申请人提供）：T。牙垢是构成龈下菌斑的复杂多微生物生物膜的常见成分。它是一种“晚期定植者”，并被认为在牙周病的发展中发挥病因作用。T. Denticola ATCC 35405在其2.8 Mb环状基因组中含有完整的多样性生成逆转录元件（DGR）。DGRs是一个新发现的逆转录元件家族，它能在靶基因中产生多样性。它们通过模板依赖性逆转录酶介导的机制发挥作用，该机制在蛋白质编码序列的特定位点引入核苷酸取代。可变残基展示在专门的C型凝集素支架的配体结合口袋中，其平衡蛋白质多样性与结构稳定性，产生用于潜在配体-受体相互作用的大量受体库。除了与DGR相关的靶标外，T.齿垢菌基因组包括六个额外的靶基因，所有这些基因都被预测为编码表面暴露的脂蛋白。我们估计潜在的1024个独特的多肽序列的7个目标蛋白质，远远超过任何天然存在的蛋白质多样化系统的估计能力。这个R21的目标是评估T.齿垢类已经进化出一种基于DGR的系统，以在其细胞表面上展示大量可变的蛋白质组库。我们的具体目标是：1）测试的假设，T。DGR能够指导预测的靶基因的位点特异性诱变，和2）测试多样化的靶基因编码表面暴露的脂蛋白的假设。DGRs代表了一种新发现的产生蛋白质多样性的机制，它们有可能赋予宿主强大的选择优势。对于T.因此，我们认为，新的结合相互作用的加速进化可以增加生物体在其所处的高度动态的微生物群落中的适应性。了解该物种中的DGR系统不仅可以揭示细菌进化的新机制，还可以为理解适应提供新的范例，这些适应有助于参与在健康和疾病中发挥作用的微生物财团。 公共卫生相关性：齿垢密螺旋体是龈下菌斑的常见成分，被认为是牙周病的发病机制之一。我们的研究将有助于了解这种口腔细菌的定植和毒力机制。