Tools to Connect Protein Conformations, Dynamics, and Associations

描述(申请人提供)：这项工作的总体目标是开发新的单分子显微镜方法，这将使表面化学影响吸附蛋白质构象和分子间结合的方式的机制研究成为可能。虽然对蛋白质吸附的抵抗力经常被认为是特定应用(生物传感、生物兼容性等)所必需的，但即使是最具蛋白质抵抗力的表面也允许蛋白质吸附。因此，这项工作将检验这一假设，即邻近表面化学间接影响蛋白质吸附后的行为，从而影响分子间的倾向。 关联(绑定、聚合等)。从机理上理解蛋白质吸附后的行为以及表面调节这种行为的能力，最终将为各种生物医学技术带来更好的表面涂层。作为一种相关和方便的模型系统，荧光标记的纤维连接蛋白(FN)将在生物相容的模型表面以及专门探测静电、亲水和疏水相互作用的表面上进行研究。这项工作将在固-水界面使用单分子荧光显微镜技术，能够同时测量单个FN分子的分子构象，并跟踪其对动态过程的影响，如吸附、扩散、解吸、聚集和受体结合。FN标记之间的共振能量转移将被用来探测分子构象。第一个具体目标将检查不同表面影响FN构象的能力，以及这对FN表面亲和力和扩散的后续影响。在这一理解的基础上，第二个目标将解决蛋白质之间的相互作用，以使其倾向于形成稳定的蛋白质膜。表面有望通过蛋白质在表面的流动性和它们形成簇的倾向间接影响薄膜的形成，这些性质可能取决于FN的构象。

DESCRIPTION (provided by applicant): The overall objective of this work is to develop novel single molecule microscopy methods that will enable mechanistic studies of the ways in which surface chemistry affects adsorbed protein conformation and intermolecular associations. Although resistance to protein adsorption is often cited as necessary for a particular application (biosensing, biocompatibility, etc.), even the most protein- resistant surfaces permit some protein adsorption. Therefore, this work will test the hypothesis that vicinal surface chemistry indirectly affects protein behavior after adsorption to influence the propensity for intermolecular associations (binding, aggregation, etc.). A mechanistic understanding of post- adsorptive protein behavior and the ability of the surface to mediate this behavior will ultimately lead to better surface coatings for a variety of biomedical technologies. As a relevant and convenient model system, fluorescently-labeled fibronectin (Fn) will be studied on model biocompatible surfaces as well as surfaces that specifically probe electrostatic, hydrophilic and hydrophobic interactions. This work will use single-molecule fluorescence microscopy techniques at the solid-aqueous interface that are capable of simultaneously measuring the molecular conformation of an individual Fn molecule and tracking its effect on dynamic processes such as adsorption, diffusion, desorption, aggregation, and receptor binding. Resonance energy transfer between Fn labels will be used to probe molecular conformation. The first specific aim will examine the ability of different surfaces to influence Fn conformation and the subsequent effect this has on Fn surface affinity and diffusion. Building on this understanding, the second aim will address protein-protein interactions for their propensity to form a stable protein film. The surfac is expected to indirectly influence film formation through the mobility of proteins on the surface and their propensity for cluster formation, properties that likely depend on Fn conformation.