Impact of Genetic Variability on Cellular Pathways and Host-Microbiome Interactio

遗传变异对细胞途径和宿主-微生物组相互作用的影响

• 批准号: 8549106
• 负责人: MARK S. SILVERBERG
• 金额: $ 25.46万
• 依托单位: SINAI HEALTH SYSTEM
• 依托单位国家: 美国
• 财政年份: 2002
• 资助国家: 美国
• 起止时间: 2002-09-30 至 2017-08-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8549106
• 关键词: Accounting; Achievement; Address; Affect; Area; Bacteria; Biology; Clinical; Data; Data Collection; Data Coordinating Center; Disease; Functional disorder; Future; Gastrointestinal tract structure; Gene Expression; Genes; Genetic; Genetic Predisposition to Disease; Genetic Research; Genetic Variation; Goals; Heritability; Hospitals; Individual; Inflammatory; Inflammatory Bowel Diseases; Inflammatory disease of the intestine; Inherited; Intestines; Knowledge; Laboratories; Lead; Measures; Molecular Profiling; National Institute of Diabetes and Digestive and Kidney Diseases; Natural History; Outcome; Pathway interactions; Patient Recruitments; Patients; Performance; Phenotype; Predisposition; Process; Publications; Quality of life; Registries; Regulatory Element; Research; Research Institute; Resources; Series; Serum; Single Nucleotide Polymorphism; Tissue Banks; Tissues; Translating; Translational Research; Universities; Variant; Work; clinically relevant; gene environment interaction; genetic variant; genome wide association study; improved; mRNA Expression; member; microbial; microbiome; prevent; success; tool

DESCRIPTION (provided by applicant): To date more than 100 genetic variants are known to be associated with inflammatory bowel disease (IBD). The majority of these have been identified by genome-wide association studies (GWAS). The individual Genetic Research Centers (GRCs) and the collective NIDDK IBD Genetics Consortium have successfully interacted for the last ten years to lead many of these discoveries. However, despite significant progress it is still unknown how the vast majority of these variants lead to IBD. Answering these questions is critical to advancing our knowledge of IBD pathophysiology. The University of Toronto GRC, led by Dr. Mark Silverberg, has made unique and substantial contributions in this field by virtue of its longstanding clinical and genetics expertise in IBD. Since 2002, Dr. Silverberg has established a very large, comprehensive registry of well characterized, longitudinally followed IBD patients at Mount Sinai Hospital in addition to accompanying biospecimens stored at his laboratory at the Samuel Lunenfeld Research Institute in order to facilitate research in IBD. Utilizing these resources, the UTGRC will advance the understanding of IBD pathophysiology in the following ways: (1) To identify gene expression profiles and pathways that will aid in classifying IBD and in revealing those that are mechanistically important in IBD pathophysiology. This will be accomplished by measuring gene expression profiles in the intestinal tissue of those affected and of healthy controls. (2) To evaluate the interaction between host genetic variation and the intestinal microbiome and determine how these changes affect the phenotypic expression of IBD. This will be accomplished by determining the composition of the microbial flora adherent to the intestinal tissue of those affected and of healthy controls. (3) To continue to work in an interactive fashion with the members of the Consortium to complete the discovery of all genetic variation associated with IBD and to advance our knowledge of the functional biology of such genetic variation such that we will effect change in the outcomes of individuals affected by IBD. This will be accomplished by ongoing clinical patient and biospecimen recruitment and by bringing significant clinical and scientific expertise to the Consortium team.

描述（由申请人提供）：迄今为止，已知有100多种遗传变异与炎症性肠病（IBD）相关。其中大多数已通过全基因组关联研究（GWAS）确定。在过去的十年里，各个遗传研究中心（GRC）和集体NIDDK IBD遗传学联盟成功地进行了互动，领导了许多这些发现。然而，尽管取得了重大进展，但仍不清楚绝大多数这些变异如何导致IBD。回答这些问题对于提高我们对IBD病理生理学的认识至关重要。由Mark Silverberg博士领导的多伦多大学GRC凭借其在IBD方面的长期临床和遗传学专业知识在该领域做出了独特和实质性的贡献。自2002年以来，Silverberg博士在西奈山医院建立了一个非常大的，全面的IBD患者登记处，除了在Samuel Lunenfeld研究所的实验室储存的生物标本外，还进行了纵向随访，以促进IBD的研究。利用这些资源，UTGRC将通过以下方式促进对IBD病理生理学的理解：（1）鉴定有助于IBD分类和揭示IBD病理生理学中重要机制的基因表达谱和途径。这将通过测量受影响者和健康对照者的肠组织中的基因表达谱来实现。(2)评估宿主遗传变异和肠道微生物组之间的相互作用，并确定这些变化如何影响IBD的表型表达。这将通过确定粘附于受影响者和健康对照者的肠组织的微生物植物群的组成来实现。(3)继续以互动的方式与联盟成员合作，以完成与IBD相关的所有遗传变异的发现，并推进我们对此类遗传变异的功能生物学知识，以便我们将影响IBD患者的结局。这将通过持续的临床患者和生物标本招募以及为联盟团队带来重要的临床和科学专业知识来实现。