Role Of Nuclear Organization In Protecting Genome Stability During Recombination

核组织在重组过程中保护基因组稳定性中的作用

• 批准号: 8703127
• 负责人: Yuval Kluger
• 金额: $ 38.74万
• 依托单位: NEW YORK UNIVERSITY SCHOOL OF MEDICINE
• 依托单位国家: 美国
• 财政年份: 2008
• 资助国家: 美国
• 起止时间: 2008-09-11 至 2017-03-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8703127
• 关键词: Alleles; Antigen Receptors; Architecture; Binding; CD8B1 gene; Cells; Chromosome Territory; Chromosomes; Complication; Contracts; DNA Sequence Rearrangement; Data; Development; Disease Outcome; Employee Strikes; Ensure; Epigenetic Process; Feedback; Gene Expression Regulation; Gene Rearrangement; Genes; Genetic Recombination; Genetic Transcription; Genome; Genome Stability; Genomics; Heavy-Chain Immunoglobulins; Heterochromatin; Heterophile Antigens; Immune; Individual; Infection; Lead; Link; Lymphocyte; Maintenance; Mediating; Modeling; Molecular Conformation; Monitor; Mono-S; Movement; Mutation; Nuclear; Play; Process; Proteins; RNA; Receptor Gene; Regulation; Relative (related person); Resolution; Role; Staging; Structure; T-Cell Receptor; T-Lymphocyte; Testing; Time; artemis; chromatin modification; combinatorial; insight; interest; leukemia/lymphoma; mutant; novel; prevent; public health relevance; recombinase; repaired; simulation; synaptogenesis

DESCRIPTION (provided by applicant): Tight control of antigen-receptor gene rearrangement is required to preserve genome integrity and prevent the occurrence of damage and translocations that lead to leukemia and lymphoma. Our most recent efforts have focused on identifying the mechanism underlying regulation of RAG cleavage in individual cells. These studies have revealed that higher-order looping and nuclear organization of antigen receptor loci facilitates regulated, coordinated rearrangement in recombination centers. In brief, we discovered that the formation of large higher-order mono-allelic RAG-dependent loops, which separate the 3' end of Tcra from its chromosome territory, correlates with targeting of RAG binding and mono-allelic cleavage in this region. RAG- dependent higher-order looping facilitates RAG-dependent association of homologous (Tcra) and heterologous (Tcra/Igh) antigen receptor alleles at the time of recombination. Moreover, mono-allelic, mono- locus cleavage and the maintenance of genome stability are linked to ATM-mediated regulation of higher- order mono-allelic, mono-locus loop formation and nuclear organization of Tcra and Igh. These data support a model for feedback control of RAG activity occurring in localized recombination centers. In this renewal we aim to expand on our previous findings to further test our model and explore the mechanisms underlying ATM and RAG-mediated control of cleavage. Higher-order looping out of Tcra from the chromosome territory defines a form of looping in recombination that is distinct from the well-known intra-locus looping / contraction tha we and others previously discovered. Thus, our finding adds an entirely new layer of regulation to the rearrangement process. We will examine the relationship between structure and function by performing a detailed analysis of the Tcra/d locus at different stages of development in the presence and absence of RAG. Our approach will be to combine novel experimental and theoretic simulation using high-throughput automated analyses with highest resolution FISH (HTHR-FISH), and high-throughput monitoring of intra/inter chromosomal contacts by chromosome conformation capture (4C-seq). To determine how higher-order looping is integrated with (i) focal RAG binding, (ii) chromatin modifications, (iii) RNA levels and (iv) nuclear accessibility to control RAG cleavage in the interest of preserving genomic stability we will examine the effects of different repair proteins (ATM, 53BP1 and Artemis) in regulating chromosome dynamics of Tcra/d, Igh, Tcrb, and Tcrg (pairing, higher order looping and repositioning to repressive pericentromeric heterochromatin) to control breaks and damage on these loci. This will provide insight into how altered regulation, in the absence of individual repir factors, impacts on the translocation signature of mutant cells. Finally, we aim to determine whether ATM-mediated negative feedback regulation of RAG cleavage involves inhibition of RAG enzymatic activity. !

描述(由申请人提供)：需要严格控制抗原-受体基因重排，以保持基因组的完整性，防止导致白血病和淋巴瘤的损害和易位的发生。我们最新的努力集中在确定单个细胞中RAG裂解的潜在调控机制。这些研究表明，抗原受体基因座的高阶环和核组织促进了重组中心受调节的、协调的重排。总之，我们发现，将TCRA的3‘端从其染色体区域分离出来的大的高阶单等位基因RAG依赖环的形成与该区域的RAG结合和单等位基因切割的靶向相关。RAG依赖的高阶环在重组时促进同源(TCRA)和异源(TCRA/IgH)抗原受体等位基因的RAG依赖关联。此外，单等位基因、单基因座的切割和基因组稳定性的维持与ATM介导的对TCRA和IgH的高阶单等位基因、单基因座环的形成和核组织的调节有关。这些数据支持局部重组中心RAG活性的反馈控制模型。在这次更新中，我们的目标是扩大我们之前的发现，以进一步测试我们的模型，并探索ATM和RAG介导的卵裂控制的潜在机制。从染色体区域走出TCRA的高阶环路定义了一种重组中的环路形式，这与我们和其他人以前发现的众所周知的座位内环路/收缩不同。因此，我们的发现为重组过程增加了一层全新的监管。我们将通过在存在和不存在RAG的情况下对不同发育阶段的TCRA/d基因座进行详细分析来研究结构和功能之间的关系。我们的方法将是结合使用高通量自动化分析和最高分辨率FISH(HTHR-FISH)的新颖实验和理论模拟，以及通过染色体构象捕获对染色体内/染色体间接触的高通量监测(4C-SEQ)。为了确定高阶环路如何与(I)焦点RAG结合，(Ii)染色质修饰，(Iii)RNA水平和(Iv)核可及性相结合，以控制RAG切割，以保持基因组稳定性，我们将研究不同修复蛋白(ATM，53BP1和Artemis)在调节TCRA/d，IGH，Tcrb和TCRG染色体动力学中的作用(配对，高阶环和重新定位到抑制着丝粒周围异染色质)，以控制这些基因座的断裂和损伤。这将提供洞察，在缺乏个别REPIR因子的情况下，调节改变如何影响突变细胞的易位特征。最后，我们的目的是确定ATM介导的RAG切割的负反馈调节是否涉及对RAG酶活性的抑制。好了！