Osmotic Pressure and Crowding Effects on Folate Mediated One Carbon Metabolism
Osmotic Pressure and Crowding Effects on Folate Mediated One Carbon Metabolism
批准号:
8689382
负责人:
Elizabeth E Howell
金额:
$32.25万
依托单位国家:
美国
项目类别:
财政年份:
2014
资助国家:
美国
项目状态:
已结题
起止时间:
2014-06-01 至 2019-02-28
关键词:
AbbreviationsAddressAffectAlcoholsAminesAmino Acid SubstitutionAmino AcidsAnimalsArthritisBacteriaBacterial Drug ResistanceBacterial InfectionsBindingBiochemicalBiochemistryBiological AssayBovine Serum AlbuminCalorimetryCarbonCardiovascular DiseasesCellsCharacteristicsCoenzymesComplexCrowdingCytoplasmDHFR geneDietDiffusionDihydrofolate ReductaseDihydropteroate SynthaseDimethyl SulfoxideElementsEnvironmental Risk FactorEnzymesEpithelialEquilibriumEscherichia coliFolateFolic Acid AntagonistsFolylpolyglutamate synthaseFoodGenesGenetic ModelsGlutamatesGrowthHalf-LifeHealthHumanHydrophobicityHydrostatic PressureHydroxymethyltransferasesIn VitroLeadLigand BindingLinkMTHFR geneMalariaMalignant NeoplasmsMeasurementMeasuresMediatingMetabolismMethionineMethotrexateMethylenetetrahydrofolate reductase (NADPH)ModelingMolecular WeightMutationNADPNitric Oxide SynthaseOsmolalitiesOsmolar ConcentrationOsmotic PressureOxidation-ReductionOxidesPharmaceutical PreparationsPlayPolyethylene GlycolsPositioning AttributePregnancyProkaryotic CellsProteinsPterinsResearchRoleScientistSeriesSerineSolventsStressSystemTailTestingTetrahydrofolatesTextThymidylate SynthaseTimeTitrationsTrimethoprimTrimethoprim ResistanceVitaminsWalkingWateradverse outcomecofactordihydrofolatefitnessfolic acid metabolismfortificationin vivomacromoleculemutantnucleic acid metabolismnutritionprotein functionprotein structure functionpublic health relevanceresearch studyresistance factorsrestorationscaffoldsmall moleculesolutetrimethyloxamine
中文摘要
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英文摘要
DESCRIPTION (provided by applicant): Previous studies in the Howell lab have found that addition of neutral osmolytes to an R-plasmid encoded dihydrofolate reductase (R67 DHFR) as well as the non-homologous E. coli chromosomal DHFR (EcDHFR) result in weaker binding of the substrate, dihydrofolate (DHF). This result contrasts with the tighter binding of NADPH under these same conditions. The cofactor results are more typical, as the decreased water content reduces the desolvation penalty associated with binding. A model to explain the weaker binding of DHF to DHFR hypothesizes that weak interactions occur between dihydrofolate and various osmolytes. If the DHF"osmolyte interaction is stronger than the DHF"water interaction, then it will take more energy to lose the DHF"osmolyte pair and binding of DHF to DHFR will be more difficult. (In other words, water prefers to interact with osmolytes as compared to folate.) To expand this solvent substitution hypothesis of enzyme action, different folate derivatives as well as different folate utilizing enzymes will be studied. Aim 1 proposes a series of experiments to study how DHF and folate derivatives interact with osmolytes. A Hansch plot will be used to determine if hydrophobicity is the signature element that makes folate "sticky." Aim 2 extends these biochemical studies to include other enzymes in one carbon metabolism. Aim 3 returns to DHFR to study the effects of macromolecular crowding on DHFR activity as the motifs found in osmolytes can also be found in proteins, leading to the proposal that DHF"crowder interactions will occur and affect catalytic efficiency. Aim 4 proposes a series of in vivo tests of the folate"osmolyte interaction model by genetic complementation assays performed under low water activity conditions in E. coli. Osmotic stress is predicted to result in lower catalytic efficiencies for enzymes involved in folate mediated one carbon metabolism, ultimately leading to blockage of growth. Aim 4B considers osmolyte effects on antibacterial resistance conferred by DHFR upon host E. coli and addresses what happens to the DHF and DHFR concentrations. This groundbreaking research identifies osmolality (or low water activity) as a key environmental factor involved in modulating DHFR function. By extension, other important folate utilizing enzymes will also be impacted. Factors that affect the folate, or vitamin B9, concentration, half-life and accessibility are important to human health as the redox forms of folate are substrates and coenzymes in the one carbon cycle, which impacts amino acid and nucleic acid metabolism. As animals do not synthesize folate or vitamin B9, they must obtain it from their diet. The consequences of insufficient folate nutrition can be seen in the adverse outcomes of pregnancy, thus the recent folate fortification of foods. Antifolates are also used as treatments o bacterial infections, malaria, cancer, arthritis, cardiovascular disease, etc. These are a few examples where folate biochemistry plays a role in human health.
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Crowders Steal Dihydrofolate Reductase Ligands through Quinary Interactions.
Crowders 通过五元相互作用窃取二氢叶酸还原酶配体。
DOI:
10.1021/acs.biochem.8b01110
发表时间:
2019
期刊:
Biochemistry
影响因子:
2.9
作者:
[DuffJr,MichaelR, Desai,Nidhi, Craig,MichaelA, Agarwal,PratulK, Howell,ElizabethE]
通讯作者:
Howell,ElizabethE
In Vivo Titration of Folate Pathway Enzymes.
叶酸途径酶的体内滴定。
DOI:
10.1128/aem.01139-18
发表时间:
2018
期刊:
Applied and environmental microbiology
影响因子:
4.4
作者:
[Nambiar,Deepika, Berhane,Timkhite-Kulu, Shew,Robert, Schwarz,Bryan, DuffJr,MichaelR, Howell,ElizabethE]
通讯作者:
Howell,ElizabethE
DOI:
10.1021/acs.biochem.5b00981
发表时间:
2016-01-12
期刊:
BIOCHEMISTRY
影响因子:
2.9
作者:
[Duff, Michael R., Jr., Chopra, Shaileja, Strader, Michael Brad, Agarwal, Pratul K., Howell, Elizabeth E.]
通讯作者:
Howell, Elizabeth E.
DOI:
10.1021/acs.jmedchem.0c00546
发表时间:
2020-08-13
期刊:
Journal of medicinal chemistry
影响因子:
7.3
作者:
[Duff MR Jr, Gabel SA, Pedersen LC, DeRose EF, Krahn JM, Howell EE, London RE]
通讯作者:
London RE
DOI:
10.1016/j.ymeth.2014.11.009
发表时间:
2015-04
期刊:
METHODS
影响因子:
4.8
作者:
[Duff, Michael R., Jr., Howell, Elizabeth E.]
通讯作者:
Howell, Elizabeth E.
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