Leveraging data-science for discovery in chronic TBI

利用数据科学发现慢性 TBI

• 批准号: 9742296
• 负责人: ADAM R FERGUSON
• 金额: --
• 依托单位: VETERANS AFFAIRS MED CTR SAN FRANCISCO
• 依托单位国家: 美国
• 财政年份: 2018
• 资助国家: 美国
• 起止时间: 2018-10-01 至 2022-09-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/9742296
• 关键词: Acceleration; Activities of Daily Living; Animal Model; Award; Big Data; Big Data Methods; Biological; Blast Injuries; Categories; Central Nervous System Diseases; Chronic; Clinical; Closed head injuries; Common Data Element; Complex; Cortical Contusions; Data; Data Commons; Data Pooling; Data Provenance; Data Science; Data Sources; Deceleration; Disease; FAIR principles; Family suidae; Federal Government; Functional disorder; Funding; Future; Generations; Genetic; Goals; Grant; Healthcare; Heterogeneity; High Prevalence; Housing; Human; Impairment; Incentives; Infrastructure; Ingestion; Injury; Knowledge; Knowledge Discovery; Laboratory Research; Lateral; Link; Liquid substance; Literature; Machine Learning; Military Personnel; Modeling; Modernization; Molecular; Monkeys; Motor; Mus; National Institute of Neurological Disorders and Stroke; Nervous System Trauma; Neurobiology; Neurocognition; Neurologic; Neurosciences; Outcome; Patients; Pattern; Percussion; Personality; Population; Positioning Attribute; Principal Component Analysis; Process; Rattus; Recovery; Recovery of Function; Reproducibility; Research; Research Personnel; Research Project Grants; Rodent; Shapes; Source; Syndrome; System; Taxonomy; Testing; Therapeutic; Therapeutic Effect; Time; Translating; Translations; Traumatic Brain Injury; Treatment Efficacy; Vertebral column; Veterans; Well in self; analytical tool; bench to bedside; body system; computerized data processing; cost; data dictionary; data exchange; data integration; data resource; data reuse; data sharing; data warehouse; digital object identifier; disability; fluid percussion injury; heterogenous data; improved; innovation; insight; multidimensional data; nervous system disorder; novel; pre-clinical; precision medicine; productivity loss; repository; restoration; therapeutic development; therapeutic evaluation; tool; user-friendly

Chronic traumatic brain injury (TBI) is one of the most prevalent neurological disorders in both military and civilian populations, impacting up to 5.3 million people in the US and costing $76 billion in healthcare and loss- of-productivity. Yet relatively little is known about the precise neurobiological features of chronic TBI leading to dysfunction and disability. This lack of knowledge limits the reliability of therapeutic development in animal models and limits translation across species and into human patients. Part of the problem is that chronic TBI is intrinsically complex, involving heterogeneous damage to the most complex organ system. This results in a multifaceted syndrome spanning across heterogeneous data sources and multiple scales of analysis. This multi-scale heterogeneity makes chronic TBI difficult to understand using traditional analytical approaches that focus on a single endpoint for testing therapeutic efficacy. Single endpoints reflect a small portion of a complex system of changes that describe the holistic syndrome of chronic TBI. In this sense, complex chronic TBI is fundamentally a ‘big-data’ problem requiring pooled information and analytics to evaluate reproducibility in basic discovery and cross-species translation. The proposed project will develop novel applications of cutting edge multidimensional analytics to integrate preclinical chronic TBI data on a large scale. The goal of the proposed project is to develop an integrated workflow for preclinical discovery, reproducibility testing, and translational discovery both within and across chronic TBI types. The project team is well-positioned to execute this project given that with prior federal funding it built one of the largest multicenter, multispecies repositories of neurotrauma data to-date, housing detailed multidimensional outcome data on nearly 4000 mice, rats, pigs, and monkeys. The proposed VA merit award will expand these data with new data-donations collected from 5 preclinical TBI research laboratories across the US, including chronic (>1 month) TBI models of penetrating injury, closed head injuries, repeated mild injuries, acceleration/ deceleration, lateral fluid percussion, and blast injuries. The project will harmonize these existing data resources into a single data pool, enabling application of recent innovations from data science to render complex multidimensional endpoint data into robust syndromic patterns that can be visualized and explored by researchers in a user-friendly manner. The project will accelerate data-driven-discovery, scientific reproducibility, hypothesis-generation, and ultimately precision medicine for chronic TBI.

慢性创伤性脑损伤（TBI）是军事和军事领域最常见的神经系统疾病之一， 平民，影响美国多达530万人，造成760亿美元的医疗保健和损失， 生产力。然而，对慢性TBI的精确神经生物学特征知之甚少， 功能障碍和残疾。这种知识的缺乏限制了动物治疗开发的可靠性。 模型和限制跨物种和人类患者的翻译。部分问题在于慢性TBI 本质上很复杂，涉及对最复杂的器官系统的异质损伤。这导致 跨异构数据源和多个分析尺度的多方面综合征。这 多尺度异质性使得慢性TBI难以使用传统的分析方法来理解， 专注于测试治疗效果的单一终点。单个端点反映了一小部分 描述慢性TBI整体综合征的复杂变化系统。从这个意义上说， TBI从根本上说是一个“大数据”问题，需要汇集信息和分析来评估再现性 在基础发现和跨物种翻译方面。建议的项目将开发新的应用， 尖端的多维分析，以大规模整合临床前慢性TBI数据。的目标 拟议的项目是为临床前发现、再现性测试和 在慢性TBI类型内和跨慢性TBI类型的翻译发现。项目团队有能力执行 这个项目是因为在联邦的资助下，它建立了一个最大的多中心、多物种的储藏库 迄今为止的神经创伤数据，包含近4000只小鼠，大鼠，猪， 还有猴子拟议的退伍军人管理局优秀奖将通过从5个国家收集的新数据捐赠来扩展这些数据 美国临床前TBI研究实验室，包括慢性（>1个月）穿透性TBI模型 损伤、闭合性头部损伤、重复性轻度损伤、加速/减速、侧向液压冲击和冲击波 受伤该项目将把这些现有的数据资源统一到一个单一的数据库中， 数据科学的最新创新，将复杂的多维端点数据转化为强大的 研究人员可以以用户友好的方式可视化和探索的症状模式。项目 将加速数据驱动的发现、科学可重复性、假设生成，并最终实现精确性 治疗慢性TBI的药物