Lupus Association with Signal Transducer and Activator of Transcription 4

狼疮与信号转导器和转录激活器的关联 4

• 批准号: 8598799
• 负责人: John Barker Harley
• 金额: --
• 依托单位: CINCINNATI VA MEDICAL CENTER RESEARCH
• 依托单位国家: 美国
• 财政年份: 2012
• 资助国家: 美国
• 起止时间: 2012-10-01 至 2016-09-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8598799
• 关键词: African American; Alleles; Autoimmunity; Award; Binding; Biological; Cells; Chromosome Mapping; Crohn' s disease; Curcumin; DNA Methylation; DNA Sequence; Data; Diagnosis; Disease; Epigenetic Process; Etiology; Faculty; Gene Expression; Genes; Genetic; Genomics; Genotype; Haplotypes; Hispanics; Histones; Immune System Diseases; In Vitro; Inflammatory; Inflammatory Response; Informatics; Insulin-Dependent Diabetes Mellitus; Interferons; Intervention; Introns; Knowledge; Lentivirus Vector; Life; Linkage Disequilibrium; Literature; Lupus; Maps; Mediating; Messenger RNA; Methodology; Methods; MicroRNAs; Military Personnel; Minority; Mission; Modification; Molecular; Pathogenesis; Population; Production; Proteins; RNA analysis; Regulation; Research; Rheumatoid Arthritis; Risk; Role; STAT4 gene; STAT4 protein; Stimulus; Systemic Lupus Erythematosus; Testing; Therapeutic; Time; Variant; design; disorder risk; genetic risk factor; genetic variant; high risk; improved; inhibitor/antagonist; insight; new technology; novel; novel therapeutics; physical mapping; programs; public health relevance; research study; response; risk variant; small hairpin RNA; transcription factor

DESCRIPTION (provided by applicant): Of the many genes recently discovered to be associated with Systemic Lupus Erythematosus the haplotype in STAT4 is among the most powerful outside the HLA region. STAT4 is an important inflammatory transcription factor with the level in the cell determining the magnitude of the response to the genes that STAT4 controls. This association is curious because it is localized in the fourth intron and the biological relevance of the relationship of this piece of DN to the function or activity of STAT4 is poorly understood. Our preliminary together with recent literature show that the risk allele expresses a higher level of STAT4 mRNA and protein and leads to increased sensitivity to Interferon-¿ (IFN-¿). The variant causing the association with lupus in STAT4 is located in a 55.5kb haplotype. DNA sequencing has defined many differences between the risk and non-risk haplotype. We will incorporate new genotyping and DNA sequencing data available and now being generated into a complete map, defining the genomic boundaries containing the causal variant(s) and identifying all of the possible variants that could contribute to disease risk and reducing the interval (Aim 1). Next, since disease risk appears to be related to expression, we will explore sequence specific epigenetic alterations in histone marks and DNA methylation to identify the regions of the risk haplotype that are poised for increased STAT4 mRNA production (Aim 2). This will be a novel application of epigenetics for allele specific gene mapping and candidate causal variant identification that if successful will have general application for identifying gene variants that change disease risk by changing expression level. We will evaluate the hypothesis that the differential binding of transcription factors are responsible for the difference in STAT4 gene expression with informatic approaches to identify potential risk haplotype differences controlling gene expression and by applying in vitro methods to establish which of the identified variants is actually responsible for the change in gene expression (Aim 3). We anticipate identifying the causal variant in STAT4 and explaining some of the important details of the mechanism that generates risk for lupus. Finally, throughout the proposed program of research on STAT4 we will explore progressively more sophisticated strategies for decreasing the increased STAT4 activity in the risk haplotype (Aim 4). Initially, we will explore the potential impact on STAT4 activity with the known inhibitors (lisopfylline, curcumin, and statins). Later in the program and after we identify candidate causal transcription factors, we will deliver specific shRNA with lentivirus vectors to inhibit the actionof the candidate causal transcription factor(s), which may have the potential to reduce the increased STAT4 expression of the risk allele, returning the level of expression of the risk haplotype close to the STAT4 expression of the non-risk allele and, thereby, reducing the risk of lupus. STAT4 also is associated with rheumatoid arthritis, Crohn's disease, and type 1 diabetes, giving broad importance to any effort to understand STAT4 mechanism in autoimmunity, especially if this knowledge were to bring us closer to more effective and specific therapies for the immune dysfunction of these diseases.

描述（由申请人提供）： 最近发现与系统性红斑狼疮相关的许多基因中，STAT4 的单倍型是 HLA 区域之外最强大的基因之一。 STAT4是一种重要的炎症转录因子，其在细胞中的水平决定了炎症的程度 对 STAT4 控制的基因的反应。这种关联很奇怪，因为它位于第四个内含子中，而这一段 DN 与 STAT4 功能或活性之间的生物学相关性知之甚少。我们的初步研究和最近的文献表明，风险等位基因表达更高水平的 STAT4 mRNA 和蛋白质，并导致对干扰素-¿ (IFN-¿) 的敏感性增加。 STAT4 中导致与狼疮相关的变异位于 55.5kb 单倍型中。 DNA 测序确定了风险单倍型和非风险单倍型之间的许多差异。我们将整合现有的新基因分型和 DNA 测序数据，并将其生成完整的图谱，定义包含因果变异的基因组边界，并识别所有可能的变异。 有助于提高疾病风险并缩短间隔时间（目标 1）。接下来，由于疾病风险似乎与表达相关，我们将探索组蛋白标记和 DNA 甲基化中的序列特异性表观遗传改变，以确定风险单倍型中有望增加 STAT4 mRNA 产量的区域（目标 2）。这将是表观遗传学在等位基因特异性基因定位和候选因果变异鉴定中的一个新应用，如果成功，将具有普遍的应用，用于鉴定通过改变表达水平来改变疾病风险的基因变异。我们将评估转录因子的差异结合导致 STAT4 基因表达差异的假设，通过信息学方法识别控制基因表达的潜在风险单倍型差异，并通过应用体外方法确定哪些已识别的变体实际上负责基因表达的变化（目标 3）。我们预计会识别 STAT4 中的因果变异，并解释产生狼疮风险的机制的一些重要细节。最后，在整个 STAT4 拟议研究计划中，我们将逐步探索更复杂的策略，以减少风险单倍型中增加的 STAT4 活性（目标 4）。首先，我们将探讨已知抑制剂（利索茶碱、姜黄素和他汀类药物）对 STAT4 活性的潜在影响。在该计划的后期，在我们确定候选因果转录因子后，我们将用慢病毒载体传递特定的shRNA以抑制候选因果转录因子的作用，这可能有可能减少风险等位基因增加的STAT4表达，使风险单倍型的表达水平恢复到接近非风险等位基因的STAT4表达，从而降低狼疮风险。 STAT4 还与类风湿性关节炎、克罗恩病和 1 型糖尿病相关，因此了解 STAT4 在自身免疫中的机制的努力具有广泛的重要性，特别是如果这些知识能让我们更接近针对这些疾病的免疫功能障碍的更有效和特异性的治疗方法。