Mechanisms of X chromosome dosage compensation in C. elegans

线虫X染色体剂量补偿机制

• 批准号: 8839798
• 负责人: Sevinc Ercan
• 金额: $ 28.66万
• 依托单位: NEW YORK UNIVERSITY
• 依托单位国家: 美国
• 财政年份: 2014
• 资助国家: 美国
• 起止时间: 2014-05-01 至 2019-04-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8839798
• 关键词: Address; Affect; Animal Model; Binding; Binding Sites; Caenorhabditis elegans; Cell division; Cell physiology; ChIP-seq; Chromatin; Chromatin Structure; Chromosome Condensation; Chromosome Segregation; Chromosome Structures; Chromosomes; Complex; DNA; DNA Repair; Defect; Development; Disease; Distal; Distant; Dosage Compensation (Genetics); Embryo; Embryonic Development; Experimental Models; Feedback; Gene Expression; Genes; Genetic Transcription; Goals; Health; Histone H4; Human; Individual; Knowledge; Link; Lysine; Maintenance; Malignant Neoplasms; Measures; Mediating; Methylation; Methyltransferase; Molecular; Molecular Conformation; Mono-S; Mutation; Normal Cell; Organism; Play; Process; Protein Complex Subunit; Recruitment Activity; Regulation; Reporter; Repression; Role; Site; Structure; Testing; Transcript; Transcriptional Regulation; Transgenes; X Chromosome; autosome; base; cohesin; condensin; gene repression; genome-wide; knock-down; male; mutant; promoter; transcriptome sequencing

DESCRIPTION (provided by applicant): Regulation of chromosome structure is important for normal cell function and is often disrupted in disease. Condensins are evolutionarily conserved, multi-subunit protein complexes that are essential for chromosome condensation and segregation during cell division and play key roles in transcription regulation and DNA repair. Most organisms contain two types of condensins, which perform different functions and localize to different chromosomal regions. C. elegans contains a third type of condensin that specifically binds to and represses X chromosome transcription to accomplish dosage compensation within the dosage compensation complex (DCC). It is not known how condensins are targeted to their binding sites, and how they regulate chromosome structure and transcription. Our goal is to address this significant gap in our knowledge by determining the mechanism of DCC binding and function in C. elegans. C. elegans DCC serves as an excellent experimental model to study condensin binding and function. DCC is recruited specifically to the X chromosome and represses transcription of both X chromosomes in XX hermaphrodites to equalize overall X-linked transcript levels to that of XO males. DCC is first targeted to X- specific recruitment site, and then spreads onto physically connected chromatin. Spreading gives rise to ~90% of the DCC binding sites along the X. Majority of these sites are at active gene promoters. There is no direct relationship between DCC binding and repression, thus DCC may regulate genes at long-range. Important gaps in our understanding of DCC mechanism is the relation between DCC binding and transcription at the local and global level, and the molecular mechanism by which the DCC spreads onto the chromosome. The objective of this application is to 1) test if DCC binding is sufficient and required for repression, 2) determine the role of H4K20me1 in DCC binding 3) determine how the DCC affects chromosome structure of the X. We will accomplish these objectives by analyzing the effects of ectopic DCC binding, DCC binding site deletions, X chromosome duplications and measure DCC localization, gene expression and chromosome structure genome-wide using ChIP-seq, RNA-seq and 4C-seq, respectively. At the completion of our project we will have a better understanding of a persistent question: how do condensins bind to chromosomes and affect its structure and function. This is relevant to health, because chromosome structure and condensin function is essential for proper chromosome segregation, transcription, and DNA repair, processes that are disrupted in cancers and developmental diseases.

描述（由申请人提供）：染色体结构的调节对正常细胞功能很重要，在疾病中经常被破坏。凝聚蛋白是一种进化上保守的多亚基蛋白复合物，在细胞分裂过程中对染色体凝聚和分离至关重要，在转录调控和DNA修复中发挥关键作用。大多数生物体含有两种类型的凝聚蛋白，它们执行不同的功能并定位于不同的染色体区域。秀丽隐杆线虫含有第三种凝缩蛋白，它特异性地结合并抑制X染色体转录，以完成剂量补偿复合体（DCC）内的剂量补偿。目前尚不清楚凝缩蛋白是如何靶向其结合位点的，以及它们是如何调节染色体结构和转录的。我们的目标是通过确定DCC在秀丽隐杆线虫中的结合和功能机制来解决我们知识中的这一重大空白。秀丽隐杆线虫DCC是研究凝缩蛋白结合及其功能的良好实验模型。在XX雌雄同体中，DCC被特异性地招募到X染色体上，并抑制两个X染色体的转录，从而使X连锁转录的总体水平与XO雄性相等。DCC首先靶向X特异性的招募位点，然后扩散到物理连接的染色质上。沿x的扩散产生约90%的DCC结合位点，这些位点大多数位于活性基因启动子上。DCC的结合与抑制无直接关系，因此DCC可能对基因进行远程调控。我们对DCC机制理解的重要空白是局部和全局水平上DCC结合与转录之间的关系，以及DCC在染色体上扩散的分子机制。本应用程序的目的是1)测试DCC结合是否足够并且需要抑制，2)确定H4K20me1在DCC结合中的作用3)确定DCC如何影响X的染色体结构。我们将通过分析异位DCC结合，DCC结合位点缺失，X染色体重复的影响以及分别使用ChIP-seq， RNA-seq和4C-seq测量DCC定位，基因表达和染色体结构来实现这些目标。在我们的项目完成后，我们将更好地理解一个一直存在的问题：凝缩蛋白是如何与染色体结合并影响其结构和功能的。这与健康有关，因为染色体结构和凝缩蛋白功能对染色体分离、转录和DNA修复至关重要，而这些过程在癌症和发育性疾病中被破坏。