Kinesin and +TIP-based microtubule steering

基于驱动蛋白和 TIP 的微管转向

• 批准号: 8917267
• 负责人: William Olaf Hancock
• 金额: $ 43.39万
• 依托单位: PENNSYLVANIA STATE UNIVERSITY, THE
• 依托单位国家: 美国
• 财政年份: 2012
• 资助国家: 美国
• 起止时间: 2012-09-21 至 2017-08-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8917267
• 关键词: Accounting; Affinity; Alzheimer' s Disease; Axon; Behavior; Binding; Biochemical; Biological Models; Cell physiology; Cells; Complex; Computer Simulation; Coupled; Cytoskeleton; Dendrites; Detection; Disease; Drosophila genus; Epithelial Cells; Excision; Filament; Fluorescence; Foundations; Genes; Geometry; Goals; Growth; Human; Huntington Disease; In Vitro; Injury; Interferometry; Kinesin; Length; Link; Maintenance; Measurement; Measures; Mechanics; Mediating; Methods; Microtubules; Mitosis; Mitotic; Modeling; Molecular Sieve Chromatography; Motor; Mutation; Nerve Regeneration; Neurodegenerative Disorders; Neurons; Nutrient; Play; Plus End of the Microtubule; Property; Protein Fragment; Proteins; Radial; Recombinants; Regulation; Role; Study models; Surface; System; Tail; Testing; Trauma; Validation; Work; base; cell type; computer studies; fly; in vitro testing; in vivo; in vivo imaging; insight; neuronal cell body; novel; protein complex; protein protein interaction; reconstitution; reconstruction; repaired; research study; simulation; single molecule

DESCRIPTION (provided by applicant): Proper organization of the microtubule cytoskeleton underlies many cellular functions such as polarized transport in neurons, nutrient transport in epithelial cells, and mitosis. While mechanisms that control microtubule alignment in mitotic cells have been extensively studied, alignment of microtubules in differentiated cells has been probed much less. Dendrites of Drosophila neurons can be used as a system to identify mechanisms that control microtubule polarity as they contain uniform-polarity minus-end-out microtubules. In vivo experiments in fly neurons have led to a model of microtubule alignment in dendrites in which a complex of kinesin-2 and plus-tip interacting proteins (+TIPs) at growing microtubule plus-ends interacts with stationary microtubules at branch points and actively directs the growing plus- end toward the cell body. This microtubule steering mechanism may serve as a general model for control of microtubule polarity in diverse cell types such as epithelial cells. The goal of this proposal is to use in vitro reconstitution, computational simulations, and analysis of Drosophila neurons to understand +TIP-kinesin based microtubule steering. The first aim of the work is to use purified proteins and microfabricated channels to develop a novel experimental system for studying microtubule steering by +TIP-kinesin complexes in vitro. This in vitro reconstitution will validate and extend in vivo observations, and will provide a system for quantifying the activity of this protein complex. The second aim will be to measure binding affinities between specific components of the system to establish quantitative biochemical parameters for modeling studies. The third aim will be to develop computational simulations of +TIP-kinesin based microtubule steering in vivo and in vitro, using quantitative parameters generated from the experiments, and then test predictions of the models using in vivo experiments. The simulations will incorporate known mechanical properties of microtubules and kinesin motors, and will provide insights into the ability of +TIPs, to withstand the mechanical loads necessary for sustained microtubule bending. These experimental and computational studies will explore novel functional roles for both kinesin motors and the +TIP proteins, and the framework developed here will provide a foundation for understanding universal aspects of microtubule polarity establishment in differentiated cells. The importance of understanding proper microtubule organization in neurons is underscored by the numerous human neurodegenerative diseases that are linked to mutations in genes involved in regulating the microtubule cytoskeleton.

描述（由申请人提供）：微管细胞骨架的适当组织是许多细胞功能的基础，如神经元的极化转运，上皮细胞的营养转运和有丝分裂。虽然有丝分裂细胞中控制微管排列的机制已经被广泛研究，但分化细胞中微管排列的探索却少得多。果蝇神经元的树突可以作为一个系统来识别控制微管极性的机制，因为它们含有均匀极性的负端微管。在果蝇神经元的体内实验中，树突中出现了微管排列模型，其中生长的微管正端的激酶2和正端相互作用蛋白（+TIPs）复合物与分支点上静止的微管相互作用，并积极地将生长的正端指向细胞体。这种微管转向机制可以作为控制不同细胞类型（如上皮细胞）微管极性的一般模型。本提案的目标是利用果蝇神经元的体外重构、计算模拟和分析来理解基于+TIP-kinesin的微管转向。本研究的第一个目的是利用纯化蛋白和微制造通道来开发一种新的实验系统，用于研究+ tip -激酶复合物在体外的微管转向。这种体外重组将验证和扩展体内观察，并将为定量该蛋白复合物的活性提供一个系统。第二个目标是测量系统特定组分之间的结合亲和力，为建模研究建立定量生化参数。第三个目标将是利用实验产生的定量参数，在体内和体外开发基于+TIP-kinesin的微管转向的计算模拟，然后使用体内实验测试模型的预测。模拟将结合已知的微管和马达的机械特性，并将深入了解+TIPs承受持续微管弯曲所需的机械载荷的能力。这些实验和计算研究将探索驱动蛋白马达和+TIP蛋白的新功能作用，这里开发的框架将为理解分化细胞中微管极性建立的普遍方面提供基础。许多人类神经退行性疾病都与参与调节微管细胞骨架的基因突变有关，这强调了理解神经元中适当微管组织的重要性。

项目成果

Measurement of the persistence length of cytoskeletal filaments using curvature distributions.

使用曲率分布测量细胞骨架丝的持久长度。

• DOI: 10.1016/j.bpj.2022.04.020
• 发表时间: 2022
• 期刊: Biophysical journal
• 影响因子: 3.4
• 作者: Wisanpitayakorn,Pattipong;Mickolajczyk,KeithJ;Hancock,WilliamO;Vidali,Luis;Tüzel,Erkan
• 通讯作者: Tüzel,Erkan

Characterization of Cell Boundary and Confocal Effects Improves Quantitative FRAP Analysis.

细胞边界和共焦效应的表征改进了定量 FRAP 分析。

• DOI: 10.1016/j.bpj.2018.01.013
• 发表时间: 2018
• 期刊: Biophysical journal
• 影响因子: 3.4
• 作者: Kingsley,JamesL;Bibeau,JeffreyP;Mousavi,SIman;Unsal,Cem;Chen,Zhilu;Huang,Xinming;Vidali,Luis;Tüzel,Erkan
• 通讯作者: Tüzel,Erkan

Molecular counting by photobleaching in protein complexes with many subunits: best practices and application to the cellulose synthesis complex.

• DOI: 10.1091/mbc.e14-06-1146
• 发表时间: 2014-11-05
• 期刊: Molecular biology of the cell
• 影响因子: 3.3
• 作者: Chen Y;Deffenbaugh NC;Anderson CT;Hancock WO
• 通讯作者: Hancock WO

Kinesin-2 from C. reinhardtii Is an Atypically Fast and Auto-inhibited Motor that Is Activated by Heterotrimerization for Intraflagellar Transport.

• DOI: 10.1016/j.cub.2020.01.046
• 发表时间: 2020-03-23
• 期刊: Current biology : CB
• 作者: Sonar P;Youyen W;Cleetus A;Wisanpitayakorn P;Mousavi SI;Stepp WL;Hancock WO;Tüzel E;Ökten Z
• 通讯作者: Ökten Z

Kinesin-2 and Apc function at dendrite branch points to resolve microtubule collisions.

• DOI: 10.1002/cm.21270
• 发表时间: 2016-01
• 期刊: CYTOSKELETON
• 影响因子: 2.9
• 作者: Weiner, Alexis T.;Lanz, Michael C.;Goetschius, Daniel J.;Hancock, William O.;Rolls, Melissa M.
• 通讯作者: Rolls, Melissa M.