The Spread of Noisy Information in Corneal Epithelial Wound Response Signaling

角膜上皮伤口反应信号中噪声信息的传播

• 批准号: 9414041
• 负责人: Roy Wollman
• 金额: $ 36.59万
• 依托单位: UNIVERSITY OF CALIFORNIA LOS ANGELES
• 依托单位国家: 美国
• 财政年份: 2015
• 资助国家: 美国
• 起止时间: 2015-08-01 至 2020-06-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/9414041
• 关键词: ATP Hydrolysis; Biochemical; Biological Assay; Biosensor; Blindness; Cell Density; Cells; Cicatrix; Coculture Techniques; Communication; Complement; Complex; Computer Simulation; Cornea; Corneal Injury; Data; Development; Devices; Diffusion; Dissection; Epidermal Growth Factor; Epithelial; Epithelium; Fluorescence Resonance Energy Transfer; Future; Generations; Glean; Goals; Growth Factor; Human; Hydrolysis; Image; Information Theory; Injury; Kinetics; Knowledge; Lead; Liquid substance; MAP Kinase Gene; Manuscripts; Measurement; Microfluidic Microchips; Microfluidics; Modeling; Molecular; Multiple Trauma; Noise; Nucleotides; Paracrine Communication; Pathway interactions; Pharmacology; Play; Process; Reaction; Regulation; Role; Science; Signal Transduction; Signaling Molecule; Site; Spatial Distribution; System; Technology; Testing; Therapeutic; Time; Tissues; Vision; Work; Wound Healing; base; corneal epithelium; design; extracellular; feeding; hazing; healing; insight; mathematical methods; mathematical model; monolayer; multi-scale modeling; next generation; novel; novel therapeutics; paracrine; prevent; programs; public health relevance; response; spatiotemporal; success; synergism; therapy development; tool; uptake; wound

 DESCRIPTION (provided by applicant): Cornea wounds can lead to scarring, hazing, and subsequent vision loss. Several biochemical signals, including extracellular nucleotides and growth factors play key roles in activation of wound healing programs. The discoveries of the molecular identities of wound induced signals prompted the development of therapies that aim to prolong the natural healing programs in order to minimize the danger of injury induced vision loss. However, these therapeutic approaches had only limited success. The lack of a detailed quantitative mechanistic understanding of the regulation of these paracrine signaling molecules prevents the critical assessment of current therapies and the development of the next generation of quantitative systems pharmacology therapeutic approaches. The goal of this work is to determine the regulatory mechanism that controls the spatio-temporal propagation of two key paracrine signaling molecules: ATP and HB-EGF. Each plays an essential role in the activation of wound healing programs. This proposal will capitalize on a novel microfluidics-based wounding platform we recently developed. The new device enables highly controlled wounding of epithelial monolayers without any fluid mixing and thereby generates real-time data of the spatio-temporal propagation of the Ca2+ and Erk pathways. We will use the new device in synergy with multiple computational approaches to dissect the paracrine signaling regulatory network that controls the propagation of wound induced signals. The specific aims are: (1) Elucidate the mechanism that controls the spread of initial ATP signals. (2) Dissect the mechanisms responsible for the spatial propagation of Erk pathway activation. (3) Determine the function of paracrine signals in reducing the noise in Erk pathway activation. In aims 1 and 2 we will construct and independently calibrate multi-scale tissue-level models that combine intercellular ATP and HB-EGF dynamics with intracellular the kinetics of Ca2+ and Erk pathway activation. The models will be used to test multiple hypotheses on the mechanism that controls the spatio-temporal propagation of ATP and HB-EGF signals to activate wound response signaling. In aim 3 we will use an information-theory approach to analyze test how the identified mechanisms contribute to the generation of a robust spatial distribution of Erk activation. The successful completion of these aims will close an important knowledge gap on the complex mechanism that regulates the activation of wound healing programs. The predictive mathematical models that we will construct and experimentally corroborate will provide an important tool in the design of future therapies that aim to augment existing wound healing programs to prevent vision loss due to corneal injury.

 描述(由申请人提供)：角膜创伤可导致疤痕、欺凌和随后的视力丧失。几种生化信号，包括细胞外核苷酸和生长因子，在激活伤口愈合程序中发挥关键作用。创伤诱导信号分子同一性的发现推动了旨在延长自然愈合程序以最大限度减少损伤导致视力丧失的危险的治疗方法的发展。然而，这些治疗方法只取得了有限的成功。缺乏对这些旁分泌信号分子调控的详细定量机制的了解，阻碍了对当前治疗的关键评估和下一代定量系统药理学治疗方法的发展。这项工作的目的是确定控制两个关键旁分泌信号分子：ATP和HB-EGF时空传播的调控机制。每一个都在激活伤口愈合程序中起着至关重要的作用。这项提议将利用我们最近开发的一种基于微流控技术的新型创伤平台。这种新设备能够在没有任何流体混合的情况下对上皮单分子层进行高度可控的损伤，从而产生钙离子和Erk通路的时空传播的实时数据。我们将在多种计算方法的协同下使用新设备来剖析控制创伤诱导信号传播的旁分泌信号调控网络。具体目的是：(1)阐明控制初始ATP信号传播的机制。(2)剖析ERK通路激活的空间传播机制。(3)确定旁分泌信号在ERK通路激活中的降噪作用。在目标1和目标2中，我们将构建和独立校准多尺度组织水平模型，该模型将细胞间ATP和HB-EGF动力学与细胞内钙和Erk途径的激活动力学相结合。这些模型将被用来检验关于控制ATP和HB-EGF信号的时空传播以激活创伤反应信号的机制的多个假说。在目标3中，我们将使用信息论方法来分析测试已识别的机制如何有助于产生稳健的ERK激活的空间分布。这些目标的成功完成将填补关于调控伤口愈合程序激活的复杂机制的重要知识空白。我们将构建和实验证实的预测性数学模型将为未来疗法的设计提供重要工具，这些疗法旨在加强现有的伤口愈合计划，以防止角膜损伤导致的视力丧失。