High-throughput Discovery of Pathogenic Cardiac Sodium Channel Variants

高通量发现致病性心脏钠通道变异体

• 批准号: 9329104
• 负责人: Andrew M. Glazer
• 金额: $ 5.71万
• 依托单位: VANDERBILT UNIVERSITY MEDICAL CENTER
• 依托单位国家: 美国
• 财政年份: 2017
• 资助国家: 美国
• 起止时间: 2017-09-01 至 2019-10-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/9329104
• 关键词: Action Potentials; Affect; American; Amino Acids; Arrhythmia; Benign; Biological Assay; Brugada syndrome; Cardiac; Cardiac Myocytes; Cell surface; Cells; Cessation of life; Classification; Code; Coupled; Data; Diagnosis; Disease; Disputes; Electrophysiology (science); Enhancers; Family member; Flow Cytometry; Gene Transfer Techniques; Genes; Genetic; Genetic screening method; Genomic Segment; Genomic medicine; Genomics; Haplotypes; Heart Diseases; High-Throughput Nucleotide Sequencing; Implantable Defibrillators; In Vitro; Inherited; Knowledge; Lead; Luciferases; Medical Genetics; Methods; Modeling; Mutagenesis; Operative Surgical Procedures; Pathogenicity; Patients; Population; Property; Reporting; Sampling; Sodium Channel; Surveys; Syndrome; Testing; United States; Untranslated RNA; Variant; Work; accurate diagnosis; base; cell killing; experimental study; genome wide association study; high throughput screening; implantation; improved; indexing; innovation; loss of function; medical schools; mutation screening; precision medicine; prevent; sodium channel proteins; sudden cardiac death; trafficking; voltage

PROJECT SUMMARY Arrhythmia-induced sudden cardiac death claims more than 250,000 lives each year in the United States. A subset of these deaths result from highly penetrant inherited arrhythmia syndromes, such as Brugada Syndrome (BrS). Loss of function variants in the voltage-gated cardiac sodium channel, SCN5A, are the major known genetic cause of BrS. Additionally, regulatory variation that affects SCN5A expression has been implicated in BrS. If BrS is diagnosed, sudden cardiac death can often be averted with an implantable cardioverter-defibrillator. Therefore the American College of Medical Genetics recommends that incidental pathogenic variants in SCN5A be reported so that patients and family members can be accurately diagnosed and treated. Unfortunately, we and others have found that the pathogenicity of SCN5A variants is often unknown or disputed and often does not accurately predict arrhythmias. Improved classification of coding and non-coding SCN5A variants as pathogenic or benign would enable more accurate diagnosis and treatment of BrS. My hypothesis is that in vitro high-throughput screening methods can accurately identify a broad set of pathogenic coding and regulatory SCN5A loss of function variants. I will pursue two specific aims to test this hypothesis: 1) Identify SCN5A coding variants that reduce channel activity and trafficking, and 2) Identify enhancers and functional non-coding SNPs affecting SCN5A expression. Under the first aim, I will survey the activity and trafficking of the 1920 possible coding variants in an important 96 amino acid region of SCN5A. My preliminary data shows proof of principle experiments that demonstrate the feasibility of mutagenesis, transgenesis, and functional assay methods necessary to complete this screen. Under the second aim, I have implemented a high-throughput sequencing-based screen to discover enhancers that affect SCN5A expression. I propose to finish this enhancer screen, then test whether SNPs that affect these enhancers' activity contribute to BrS. These studies are innovative because they leverage recently developed high-throughput sequencing-based methods to broaden and improve our understanding of variants in an important disease gene. As genomic medicine continues to become more commonplace, the challenge of interpreting patients' variants will continue to grow. This project provides a template for a general approach for improving the breadth and quality of genomic annotations to help deliver on the promise of genomic and precision medicine.

项目摘要 在美国，心律失常引起的心脏性猝死每年夺去25万多人的生命。 States.这些死亡的一个子集是由高度渗透性遗传性心律失常综合征引起的，如 Brugada综合征（BrS）电压门控心脏钠通道功能丧失变体， SCN5A是BrS的主要已知遗传原因。此外，监管变化影响 SCN 5A表达与BrS有关。如果诊断为BrS，心脏性猝死通常 可以通过植入式心律转复除颤器避免。因此，美国医学院 遗传学建议报告SCN5A中的偶然致病性变体，以便患者和 家庭成员可以得到准确的诊断和治疗。不幸的是，我们和其他人发现 SCN5A变异体的致病性通常是未知的或有争议的，并且通常不能准确地 预测心律失常将编码和非编码SCN5A变体分类为致病性的改进 或良性将使得能够更准确地诊断和治疗BrS。我的假设是在体外 高通量筛选方法可以准确地鉴定广泛的致病性编码， 调控性SCN 5A功能丧失变体。我将追求两个具体目标来检验这个假设：1） 识别降低通道活性和运输的SCN 5A编码变体，以及2）识别增强子 和影响SCN 5A表达的功能性非编码SNP。在第一个目标下，我将调查 活性和运输的1920个可能的编码变异体在一个重要的96个氨基酸的区域， SCN 5A。我的初步数据显示了原理实验的证据，证明了 诱变、转基因和功能测定方法来完成该筛选。下 第二个目标，我已经实现了一个高通量测序为基础的筛选，以发现 影响SCN 5A表达的增强子。我建议完成这个增强剂筛选，然后测试是否 影响这些增强子活性的SNP有助于BrS。这些研究具有创新性，因为 他们利用最近开发的基于高通量测序的方法来拓宽和 提高我们对一个重要疾病基因变异的理解。随着基因组医学的继续 为了变得更加普遍，解释患者变异的挑战将继续增长。 该项目提供了一个模板，为提高的广度和质量， 基因组注释，以帮助实现基因组和精准医学的承诺。